Variant report

Variant	rs10786037
Chromosome Location	chr10:94109870-94109871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10748577	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10748578	0.82[EUR][1000 genomes]
rs10748579	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10748580	0.83[EUR][1000 genomes]
rs10882028	0.85[CEU][hapmap]
rs10882042	0.96[CEU][hapmap]
rs11186914	0.96[CEU][hapmap]
rs11186915	0.96[CEU][hapmap]
rs2254667	0.93[CEU][hapmap]
rs2255718	0.96[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265195	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2488793	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2771248	0.96[CEU][hapmap]
rs2771253	0.81[EUR][1000 genomes]
rs2771256	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798254	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs3781229	0.96[CEU][hapmap]
rs3824734	0.96[CEU][hapmap]
rs4933227	0.85[CEU][hapmap]
rs4933228	0.96[CEU][hapmap]
rs4933720	0.96[CEU][hapmap]
rs4999831	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7078559	0.85[CEU][hapmap]
rs7087501	0.82[CEU][hapmap]
rs7091853	0.96[CEU][hapmap]
rs913649	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs950732	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9943333	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
3	chr10:94063600-94111800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:94067000-94113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:94081000-94112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:94088000-94112200	Weak transcription	K562	blood
7	chr10:94089000-94114600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:94089800-94114000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:94090600-94114800	Weak transcription	Small Intestine	intestine
10	chr10:94091200-94114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:94095200-94112000	Weak transcription	Brain Angular Gyrus	brain
12	chr10:94095400-94112000	Weak transcription	Fetal Heart	heart
13	chr10:94099200-94113400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:94100000-94111400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr10:94100000-94111400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:94100000-94112000	Strong transcription	Fetal Thymus	thymus
17	chr10:94100200-94113600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:94100400-94110600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:94101400-94113400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:94101600-94111400	Strong transcription	Primary hematopoietic stem cells	blood
21	chr10:94101800-94112000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr10:94103000-94110600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:94103400-94111600	Weak transcription	NHLF	lung
24	chr10:94103400-94111800	Weak transcription	HUVEC	blood vessel
25	chr10:94103400-94113800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:94104400-94113400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:94104600-94110600	Strong transcription	Fetal Muscle Leg	muscle
28	chr10:94105000-94110600	Strong transcription	Fetal Stomach	stomach
29	chr10:94105600-94112000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr10:94105600-94112000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:94105800-94111400	Strong transcription	Placenta	Placenta
32	chr10:94105800-94115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:94106000-94112400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:94106400-94111000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:94106600-94112800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:94106800-94110400	Weak transcription	Brain Substantia Nigra	brain
37	chr10:94106800-94110800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:94107000-94111200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr10:94107200-94111200	Strong transcription	Primary T cells from cord blood	blood
40	chr10:94107400-94112000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:94107800-94110000	Weak transcription	Fetal Intestine Small	intestine
42	chr10:94107800-94111200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:94107800-94111200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:94108000-94110600	Strong transcription	Lung	lung
45	chr10:94108000-94110800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:94108000-94110800	Strong transcription	Fetal Intestine Large	intestine
47	chr10:94108000-94111200	Strong transcription	Fetal Lung	lung
48	chr10:94108000-94111600	Strong transcription	NHEK	skin
49	chr10:94108200-94110200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:94108200-94110200	Strong transcription	HMEC	breast

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