Variant report

Variant	rs10748578
Chromosome Location	chr10:94076448-94076449
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94058406..94061115-chr10:94075900..94078193,3	MCF-7	breast:
2	chr10:94048539..94051607-chr10:94074160..94076765,3	K562	blood:
3	chr10:94069350..94072645-chr10:94073354..94076853,3	K562	blood:
4	chr10:94071012..94072643-chr10:94074569..94077131,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10748577	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10748579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748580	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786031	0.81[EUR][1000 genomes]
rs10786033	0.87[EUR][1000 genomes]
rs10786037	0.82[EUR][1000 genomes]
rs10882042	0.86[EUR][1000 genomes]
rs11186914	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186915	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1971471	0.80[EUR][1000 genomes]
rs2245994	0.94[ASN][1000 genomes]
rs2253904	0.90[ASN][1000 genomes]
rs2254667	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2255718	0.82[EUR][1000 genomes]
rs2265195	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2488793	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2771248	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2771253	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2771256	0.81[EUR][1000 genomes]
rs2771265	0.87[ASN][1000 genomes]
rs2798254	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781229	0.84[EUR][1000 genomes]
rs3824734	0.86[EUR][1000 genomes]
rs4933227	0.80[EUR][1000 genomes]
rs4933228	0.86[EUR][1000 genomes]
rs4933229	0.86[EUR][1000 genomes]
rs4933720	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4999831	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7091853	0.86[EUR][1000 genomes]
rs7094433	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7908721	0.86[EUR][1000 genomes]
rs913649	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs950732	0.80[EUR][1000 genomes]
rs9943333	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
3	chr10:94052400-94080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
8	chr10:94052600-94077200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:94052600-94102000	Weak transcription	NHLF	lung
10	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
11	chr10:94052800-94087400	Weak transcription	K562	blood
12	chr10:94052800-94088600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:94053200-94086800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:94053400-94109400	Weak transcription	Fetal Brain Male	brain
15	chr10:94054400-94077400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:94054600-94101400	Weak transcription	HSMM	muscle
17	chr10:94054800-94087200	Weak transcription	NHEK	skin
18	chr10:94055000-94080600	Weak transcription	Hela-S3	cervix
19	chr10:94056800-94080600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:94056800-94087600	Weak transcription	A549	lung
21	chr10:94063400-94080800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:94063400-94081600	Weak transcription	Brain Germinal Matrix	brain
23	chr10:94063600-94109400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:94063600-94111800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr10:94064000-94077800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:94064000-94080000	Weak transcription	Brain Angular Gyrus	brain
27	chr10:94064000-94080600	Weak transcription	Fetal Kidney	kidney
28	chr10:94064000-94087600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:94064000-94087800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:94064000-94101400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:94064000-94109200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:94064200-94086400	Weak transcription	Fetal Heart	heart
33	chr10:94065800-94093000	Weak transcription	Psoas Muscle	Psoas
34	chr10:94066000-94087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:94066200-94101600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:94067000-94082800	Weak transcription	Pancreas	Pancrea
37	chr10:94067000-94089600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:94067000-94113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:94068400-94080800	Weak transcription	Ovary	ovary
40	chr10:94068400-94087600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:94068600-94089800	Weak transcription	Small Intestine	intestine
42	chr10:94069800-94080800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:94070000-94079000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:94070400-94081400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:94070600-94081400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:94070600-94081400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr10:94070800-94078000	Strong transcription	Dnd41	blood
48	chr10:94070800-94079000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:94070800-94094800	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:94071200-94077600	Weak transcription	Left Ventricle	heart

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