Variant report

Variant	rs2254667
Chromosome Location	chr10:94058824-94058825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94058406..94061115-chr10:94075900..94078193,3	MCF-7	breast:
2	chr10:94048555..94050723-chr10:94056799..94059082,2	K562	blood:
3	chr10:94058719..94060905-chr10:94061967..94063636,2	K562	blood:
4	chr10:94053556..94055789-chr10:94058244..94059937,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10748577	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748578	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748579	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10748580	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786029	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10786031	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10786033	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10786037	0.93[CEU][hapmap]
rs10882028	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882042	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186914	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971471	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2245994	0.86[ASN][1000 genomes]
rs2253904	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2255718	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2265195	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2488793	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2767654	0.84[AMR][1000 genomes]
rs2771248	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2771253	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2771256	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2771265	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2798254	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781229	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3824734	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4642988	0.84[AMR][1000 genomes]
rs4933227	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4933228	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4933229	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4933720	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4999831	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6583804	0.85[AMR][1000 genomes]
rs701846	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7078559	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs7087501	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs7090737	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7091853	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7094433	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7908721	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7914436	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7920520	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs855698	0.81[AMR][1000 genomes]
rs855699	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs855702	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs855703	0.81[AMR][1000 genomes]
rs855704	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs855707	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs913649	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9943333	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94052200-94065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94052200-94071000	Weak transcription	Fetal Intestine Large	intestine
5	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
6	chr10:94052400-94059000	Weak transcription	Primary B cells from cord blood	blood
7	chr10:94052400-94060200	Weak transcription	Aorta	Aorta
8	chr10:94052400-94062800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:94052400-94063200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:94052400-94063200	Weak transcription	Brain Anterior Caudate	brain
11	chr10:94052400-94070800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:94052400-94080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
17	chr10:94052600-94060400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:94052600-94060800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:94052600-94061800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:94052600-94062200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:94052600-94063200	Weak transcription	Brain Substantia Nigra	brain
22	chr10:94052600-94063600	Weak transcription	Brain Angular Gyrus	brain
23	chr10:94052600-94065200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:94052600-94068200	Weak transcription	Small Intestine	intestine
25	chr10:94052600-94070800	Weak transcription	NHDF-Ad	bronchial
26	chr10:94052600-94071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:94052600-94077200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:94052600-94102000	Weak transcription	NHLF	lung
29	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
30	chr10:94052800-94059000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:94052800-94061000	Weak transcription	Primary T cells from cord blood	blood
32	chr10:94052800-94063000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:94052800-94063000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:94052800-94063200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:94052800-94063200	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:94052800-94063800	Weak transcription	Adipose Nuclei	Adipose
37	chr10:94052800-94072000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:94052800-94072800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:94052800-94087400	Weak transcription	K562	blood
40	chr10:94052800-94088600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:94053000-94060400	Weak transcription	Osteobl	bone
42	chr10:94053000-94061200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:94053000-94063000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:94053000-94063600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:94053000-94070800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:94053200-94062200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:94053200-94062600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:94053200-94063000	Weak transcription	Brain Germinal Matrix	brain
49	chr10:94053200-94071400	Weak transcription	HMEC	breast
50	chr10:94053200-94074600	Weak transcription	Brain Hippocampus Middle	brain

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