Variant report

Variant	rs10786029
Chromosome Location	chr10:93919120-93919121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10748577	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10748579	0.85[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs10786031	0.88[ASN][1000 genomes]
rs10786033	0.88[ASN][1000 genomes]
rs10882028	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10882042	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1099379	0.90[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap]
rs11186914	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs11186915	0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs1229578	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1229579	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1622656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1711849	0.85[ASN][1000 genomes]
rs1776209	1.00[YRI][hapmap]
rs1971471	0.85[ASN][1000 genomes]
rs2254667	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2255718	0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2265195	0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2767654	0.89[ASN][1000 genomes]
rs2771248	0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2771256	0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2798254	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs3781229	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs3824734	0.90[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4642988	0.95[ASN][1000 genomes]
rs4933227	0.90[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4933228	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs4933229	0.85[ASN][1000 genomes]
rs4933720	0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs6583804	0.95[ASN][1000 genomes]
rs701844	0.81[ASN][1000 genomes]
rs701846	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7071943	0.86[ASN][1000 genomes]
rs7078559	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7087501	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs7090737	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs7091853	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7897555	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7908721	0.84[ASN][1000 genomes]
rs7919840	0.81[ASN][1000 genomes]
rs7920520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833385	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs855697	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs855698	0.88[ASN][1000 genomes]
rs855699	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs855702	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs855703	0.88[ASN][1000 genomes]
rs855704	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs855706	0.82[ASN][1000 genomes]
rs855707	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs855708	0.90[ASN][1000 genomes]
rs855710	0.88[ASN][1000 genomes]
rs913649	0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:93903000-93925600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:93906200-93925600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:93906800-93925600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:93906800-93926600	Weak transcription	Aorta	Aorta
6	chr10:93908600-93926400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:93911800-93926200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:93911800-93926600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:93911800-93926600	Weak transcription	Left Ventricle	heart
10	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
11	chr10:93916400-93926400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:93917200-93926200	Weak transcription	Brain Angular Gyrus	brain
13	chr10:93917400-93923400	Weak transcription	NHDF-Ad	bronchial
14	chr10:93917400-93926200	Weak transcription	Ovary	ovary
15	chr10:93917600-93925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:93918200-93926200	Weak transcription	Stomach Smooth Muscle	stomach

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