Variant report

Variant	rs7920520
Chromosome Location	chr10:93969270-93969271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93967344..93971211-chr10:94049163..94052466,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10748577	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10748579	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10786029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786031	0.95[ASN][1000 genomes]
rs10786033	0.95[ASN][1000 genomes]
rs10882028	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10882042	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1099379	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11186914	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11186915	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1229578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1229579	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1622656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1776209	1.00[YRI][hapmap]
rs1971471	0.91[ASN][1000 genomes]
rs2254667	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2255718	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2265195	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2767654	0.82[ASN][1000 genomes]
rs2771248	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2771256	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2771265	0.81[ASN][1000 genomes]
rs2798254	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3781229	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3824734	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4642988	0.88[ASN][1000 genomes]
rs4933227	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4933228	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4933229	0.90[ASN][1000 genomes]
rs4933720	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6583804	0.88[ASN][1000 genomes]
rs701846	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7071943	0.88[ASN][1000 genomes]
rs7078559	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7087501	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7090737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7091853	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7897555	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7908721	0.90[ASN][1000 genomes]
rs7914436	0.83[ASN][1000 genomes]
rs833385	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs855697	0.89[EUR][1000 genomes]
rs855698	0.81[ASN][1000 genomes]
rs855699	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs855702	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs855703	0.81[ASN][1000 genomes]
rs855704	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs855707	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs855708	0.83[ASN][1000 genomes]
rs855710	0.81[ASN][1000 genomes]
rs913649	0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	esv2761614	chr10:93960695-93981177	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv948139	chr10:93966694-93969883	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
4	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
8	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:93940200-93971200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:93940600-93970800	Weak transcription	Fetal Stomach	stomach
12	chr10:93941800-93971200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:93958400-93981000	Weak transcription	Psoas Muscle	Psoas
14	chr10:93959000-93969800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:93959000-93985800	Weak transcription	Brain Substantia Nigra	brain
16	chr10:93960800-93970000	Weak transcription	Hela-S3	cervix
17	chr10:93960800-93970800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:93960800-93976000	Weak transcription	Gastric	stomach
19	chr10:93961000-93990800	Weak transcription	Spleen	Spleen
20	chr10:93961600-93972200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:93962000-93976400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:93963000-93976400	Weak transcription	Aorta	Aorta
23	chr10:93964200-93976200	Weak transcription	Right Ventricle	heart
24	chr10:93964200-93993000	Weak transcription	Fetal Brain Female	brain
25	chr10:93964200-93996000	Weak transcription	Brain Germinal Matrix	brain
26	chr10:93964200-93997600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:93964400-93970000	Weak transcription	Brain Angular Gyrus	brain
28	chr10:93964400-93982400	Weak transcription	HSMM	muscle
29	chr10:93965000-93970000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:93966400-93986200	Weak transcription	Ovary	ovary
31	chr10:93967400-93986200	Weak transcription	Fetal Heart	heart
32	chr10:93967600-93986200	Weak transcription	Left Ventricle	heart
33	chr10:93967600-93990800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:93967800-93970800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:93967800-93971200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:93968200-93971000	Weak transcription	Adipose Nuclei	Adipose
37	chr10:93968400-93969600	Enhancers	Esophagus	oesophagus
38	chr10:93968400-93969600	Enhancers	Right Atrium	heart
39	chr10:93968400-93997000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:93968600-93989200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:93968800-93969800	Weak transcription	HUVEC	blood vessel
42	chr10:93968800-93970000	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:93968800-93970600	Weak transcription	Stomach Mucosa	stomach
44	chr10:93968800-93970600	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr10:93968800-93970800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:93968800-93978000	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:93968800-93979400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:93969000-93970000	Weak transcription	GM12878-XiMat	blood
49	chr10:93969000-93970400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:93969000-93970800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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