Variant report

Variant	rs2767654
Chromosome Location	chr10:93908910-93908911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93908349..93910559-chr10:93916099..93918355,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10786029	0.89[ASN][1000 genomes]
rs10786031	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10786033	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882028	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882042	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1099379	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186915	0.80[AMR][1000 genomes]
rs1229578	0.87[ASN][1000 genomes]
rs1229579	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1622656	0.82[ASN][1000 genomes]
rs1711849	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1971471	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2254667	0.84[AMR][1000 genomes]
rs2771248	0.84[AMR][1000 genomes]
rs3781229	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3824734	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4642988	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933227	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933228	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4933229	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6583804	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701844	0.87[ASN][1000 genomes]
rs701846	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7078559	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7087501	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7090737	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7091853	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7908721	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7914436	0.82[AMR][1000 genomes]
rs7919699	0.81[ASN][1000 genomes]
rs7919840	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7920520	0.82[ASN][1000 genomes]
rs833385	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs855698	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs855699	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs855702	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs855703	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs855704	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs855706	0.81[ASN][1000 genomes]
rs855707	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs855708	0.90[ASN][1000 genomes]
rs855710	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
2	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:93892600-93911000	Weak transcription	Fetal Heart	heart
4	chr10:93895000-93909000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:93902800-93910800	Weak transcription	Ovary	ovary
7	chr10:93902800-93911000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:93903000-93911000	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:93903000-93925600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:93905400-93916800	Weak transcription	Right Atrium	heart
11	chr10:93906200-93925600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:93906800-93911000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:93906800-93925600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:93906800-93926600	Weak transcription	Aorta	Aorta
15	chr10:93907200-93910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:93907800-93911200	Enhancers	Psoas Muscle	Psoas
17	chr10:93908000-93910600	Weak transcription	Brain Angular Gyrus	brain
18	chr10:93908000-93910800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:93908000-93910800	Weak transcription	Left Ventricle	heart
20	chr10:93908000-93915800	Weak transcription	Right Ventricle	heart
21	chr10:93908200-93910800	Weak transcription	Brain Substantia Nigra	brain
22	chr10:93908200-93915800	Weak transcription	Fetal Lung	lung
23	chr10:93908400-93910800	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:93908400-93911600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:93908600-93926400	Weak transcription	Brain Anterior Caudate	brain
26	chr10:93908800-93909000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr10:93908800-93909400	Enhancers	Skeletal Muscle Male	skeletal muscle

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