Variant report

Variant	rs7914436
Chromosome Location	chr10:94040444-94040445
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94038337..94041233-chr10:94045379..94048057,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10748576	0.80[ASN][1000 genomes]
rs10786031	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10786033	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882028	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10882042	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186914	0.85[ASN][1000 genomes]
rs11186915	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1971471	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2253904	0.81[ASN][1000 genomes]
rs2254667	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2767654	0.82[AMR][1000 genomes]
rs2771248	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2771265	0.83[ASN][1000 genomes]
rs3781229	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824734	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4642988	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4933227	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4933228	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933229	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933720	0.85[ASN][1000 genomes]
rs6583804	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7078559	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7087501	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7091853	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7908721	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7920520	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94020200-94049800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:94025800-94049800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:94032800-94043800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94039200-94048800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:94039200-94049600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:94039400-94043000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:94039400-94043200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:94039400-94044000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:94039400-94044000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:94039600-94044000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:94039600-94044200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:94039600-94044200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:94039800-94049600	Weak transcription	Right Atrium	heart
14	chr10:94040000-94041400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:94040000-94044000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:94040000-94048600	Weak transcription	Lung	lung
17	chr10:94040400-94044200	Weak transcription	Psoas Muscle	Psoas

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