Variant report

Variant	rs4642988
Chromosome Location	chr10:93927525-93927526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10786029	0.95[ASN][1000 genomes]
rs10786031	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786033	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882028	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882042	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1099379	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11186915	0.80[AMR][1000 genomes]
rs1229578	0.86[ASN][1000 genomes]
rs1229579	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1622656	0.81[ASN][1000 genomes]
rs1711849	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1971471	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2254667	0.84[AMR][1000 genomes]
rs2767654	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2771248	0.84[AMR][1000 genomes]
rs3781229	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3824734	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933227	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933228	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933229	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583804	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701844	0.85[ASN][1000 genomes]
rs701846	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071943	0.84[ASN][1000 genomes]
rs7078559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087501	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090737	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7091853	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7897555	0.85[ASN][1000 genomes]
rs7908721	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7914436	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7919840	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7920520	0.88[ASN][1000 genomes]
rs833385	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855698	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs855699	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs855702	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs855703	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs855704	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs855707	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs855708	0.88[ASN][1000 genomes]
rs855710	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
2	chr10:93925000-93930000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:93925600-93928200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:93926200-93927600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
5	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:93926800-93929600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
8	chr10:93926800-93930800	Weak transcription	Right Ventricle	heart
9	chr10:93926800-93941200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:93926800-93941200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:93926800-93942000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
13	chr10:93927000-93929000	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:93927000-93931800	Weak transcription	Aorta	Aorta
15	chr10:93927000-93933800	Weak transcription	Brain Substantia Nigra	brain
16	chr10:93927000-93935000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:93927000-93938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:93927000-93940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:93927000-93940600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:93927000-93947600	Weak transcription	Primary B cells from cord blood	blood
21	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
22	chr10:93927000-93966200	Weak transcription	Ovary	ovary
23	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:93927200-93928000	Weak transcription	Fetal Heart	heart
25	chr10:93927200-93935400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
27	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:93927400-93932600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:93927400-93933800	Weak transcription	Left Ventricle	heart
30	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine

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