Variant report

Variant	rs1711849
Chromosome Location	chr10:93839685-93839686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93838081..93839704-chr10:93849974..93852116,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10786029	0.85[ASN][1000 genomes]
rs10786031	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10786033	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10882028	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1099379	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1229578	0.95[ASN][1000 genomes]
rs1229579	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1622656	0.90[ASN][1000 genomes]
rs1971471	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2767654	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3824734	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4642988	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933227	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4933228	0.81[AMR][1000 genomes]
rs4933229	0.81[AMR][1000 genomes]
rs6583804	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs701844	0.95[ASN][1000 genomes]
rs701846	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7078559	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7087501	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7090737	0.85[ASN][1000 genomes]
rs7091853	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7908721	0.81[AMR][1000 genomes]
rs7919699	0.82[ASN][1000 genomes]
rs7919840	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs833385	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs855698	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs855699	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs855702	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs855703	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs855704	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs855706	0.83[ASN][1000 genomes]
rs855707	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs855708	0.92[ASN][1000 genomes]
rs855710	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
2	chr10:93796200-93840800	Weak transcription	Psoas Muscle	Psoas
3	chr10:93808000-93842600	Weak transcription	Fetal Lung	lung
4	chr10:93808200-93842800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:93808400-93844400	Weak transcription	Primary T cells from cord blood	blood
6	chr10:93812800-93839800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:93812800-93840600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:93815400-93847200	Weak transcription	Hela-S3	cervix
9	chr10:93817000-93842600	Weak transcription	Gastric	stomach
10	chr10:93817600-93840000	Weak transcription	Spleen	Spleen
11	chr10:93817600-93840200	Weak transcription	Esophagus	oesophagus
12	chr10:93817600-93840400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:93817600-93840800	Weak transcription	Lung	lung
14	chr10:93823200-93842400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:93823800-93840000	Weak transcription	Fetal Intestine Large	intestine
16	chr10:93824400-93842600	Weak transcription	Right Ventricle	heart
17	chr10:93824800-93842600	Weak transcription	HSMMtube	muscle
18	chr10:93828400-93840000	Weak transcription	Fetal Heart	heart
19	chr10:93828800-93843000	Weak transcription	Osteobl	bone
20	chr10:93830400-93840800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:93831800-93842600	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:93832200-93842200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:93832400-93840600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:93833400-93842800	Weak transcription	Thymus	Thymus
25	chr10:93834400-93840600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:93834400-93841400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:93834400-93843400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:93835200-93840000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:93835200-93840200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:93836000-93840400	Weak transcription	Brain Germinal Matrix	brain
31	chr10:93836000-93841400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:93836000-93853200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:93836400-93840200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:93836800-93840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:93837000-93841400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:93837200-93841400	Strong transcription	Ovary	ovary
37	chr10:93837200-93842000	Strong transcription	Liver	Liver
38	chr10:93837200-93842800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:93837400-93840400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:93837400-93842600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:93837400-93847600	Weak transcription	HUVEC	blood vessel
42	chr10:93837600-93841000	Strong transcription	Left Ventricle	heart
43	chr10:93837600-93842000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr10:93837600-93847200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:93837600-93847600	Weak transcription	Colonic Mucosa	Colon
46	chr10:93837800-93840000	Weak transcription	Pancreas	Pancrea
47	chr10:93837800-93841200	Strong transcription	Brain Angular Gyrus	brain
48	chr10:93837800-93841200	Strong transcription	Brain Hippocampus Middle	brain
49	chr10:93837800-93841200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr10:93837800-93841400	Strong transcription	Adipose Nuclei	Adipose

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