Variant report

Variant	rs10786033
Chromosome Location	chr10:93992476-93992477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10748577	0.88[EUR][1000 genomes]
rs10748578	0.87[EUR][1000 genomes]
rs10748579	0.84[EUR][1000 genomes]
rs10748580	0.84[EUR][1000 genomes]
rs10786029	0.88[ASN][1000 genomes]
rs10786031	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882028	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882042	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1099379	0.81[AMR][1000 genomes]
rs11186914	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11186915	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1229578	0.80[ASN][1000 genomes]
rs1229579	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1711849	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1971471	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2254667	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2265195	0.85[EUR][1000 genomes]
rs2488793	0.84[EUR][1000 genomes]
rs2767654	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2771248	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2771253	0.88[EUR][1000 genomes]
rs2771265	0.80[ASN][1000 genomes]
rs2798254	0.88[EUR][1000 genomes]
rs3781229	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824734	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4642988	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933227	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933228	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933229	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933720	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4999831	0.84[EUR][1000 genomes]
rs6583804	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs701846	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7071943	0.86[ASN][1000 genomes]
rs7078559	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7087501	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090737	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7091853	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094433	0.86[EUR][1000 genomes]
rs7897555	0.90[ASN][1000 genomes]
rs7908721	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914436	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7920520	0.95[ASN][1000 genomes]
rs833385	0.84[AMR][1000 genomes]
rs855698	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855699	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855702	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855703	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855704	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855707	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855708	0.82[ASN][1000 genomes]
rs855710	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs913649	0.84[EUR][1000 genomes]
rs9943333	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
2	chr10:93964200-93993000	Weak transcription	Fetal Brain Female	brain
3	chr10:93964200-93996000	Weak transcription	Brain Germinal Matrix	brain
4	chr10:93964200-93997600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:93968400-93997000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:93969200-93997800	Weak transcription	Pancreas	Pancrea
7	chr10:93969200-93998600	Weak transcription	Lung	lung
8	chr10:93969600-93997800	Weak transcription	Esophagus	oesophagus
9	chr10:93971400-93993200	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:93971400-93997800	Weak transcription	Stomach Mucosa	stomach
11	chr10:93971600-93997000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:93973000-93997000	Weak transcription	Liver	Liver
13	chr10:93975400-93998000	Weak transcription	Colonic Mucosa	Colon
14	chr10:93975600-93997000	Weak transcription	HepG2	liver
15	chr10:93976600-93999000	Weak transcription	Aorta	Aorta
16	chr10:93976800-93997200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:93976800-93998800	Weak transcription	Gastric	stomach
18	chr10:93977000-93998400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:93977600-93998000	Weak transcription	Primary B cells from cord blood	blood
20	chr10:93979200-93994600	Weak transcription	Fetal Brain Male	brain
21	chr10:93979400-93998600	Weak transcription	Primary T cells from cord blood	blood
22	chr10:93979800-93996800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:93982600-93997800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:93982800-93997600	Weak transcription	Fetal Thymus	thymus
25	chr10:93983200-93998400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:93983200-93998400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:93983400-93997800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:93983400-93998000	Weak transcription	HSMMtube	muscle
29	chr10:93983400-93998200	Weak transcription	HSMM	muscle
30	chr10:93983600-93998400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:93984400-93992600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:93984400-93997000	Weak transcription	Hela-S3	cervix
33	chr10:93984400-93997400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:93984600-93992600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:93985000-93998800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:93986800-93993000	Weak transcription	Left Ventricle	heart
37	chr10:93987000-93997800	Weak transcription	Ovary	ovary
38	chr10:93988200-93998600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:93988800-93997800	Weak transcription	Thymus	Thymus
40	chr10:93989400-93997200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr10:93989400-93998600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:93989600-93997800	Weak transcription	Placenta	Placenta
43	chr10:93989800-93993000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:93990600-93992600	Weak transcription	GM12878-XiMat	blood
45	chr10:93990800-93997000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:93991200-93997000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:93991400-93992800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:93991400-93993000	Weak transcription	Right Atrium	heart
49	chr10:93991400-93993600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:93991400-93994200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links