Variant report

Variant	rs855710
Chromosome Location	chr10:93865543-93865544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10786029	0.88[ASN][1000 genomes]
rs10786031	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786033	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10882028	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1099379	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1229578	0.92[ASN][1000 genomes]
rs1229579	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1622656	0.86[ASN][1000 genomes]
rs1711849	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1971471	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2767654	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781229	0.81[ASN][1000 genomes]
rs3824734	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4642988	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933227	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933228	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4933229	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6583804	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701844	0.92[ASN][1000 genomes]
rs701846	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078559	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7087501	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7090737	0.88[ASN][1000 genomes]
rs7091853	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7908721	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7919699	0.86[ASN][1000 genomes]
rs7919840	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920520	0.81[ASN][1000 genomes]
rs833385	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs855698	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855699	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855702	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855703	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855704	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855706	0.86[ASN][1000 genomes]
rs855707	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855708	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
2	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
3	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
4	chr10:93859400-93874800	Weak transcription	Fetal Intestine Large	intestine
5	chr10:93861000-93873600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:93861400-93872600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:93861400-93879000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:93861800-93869800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:93862000-93866800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:93862000-93867200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:93862000-93869400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:93862000-93874200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:93862000-93881400	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:93862000-93881400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
16	chr10:93862200-93866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:93862200-93866800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:93862200-93867400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:93862400-93867400	Weak transcription	K562	blood
20	chr10:93862400-93868800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:93862600-93870000	Weak transcription	NHLF	lung
22	chr10:93862800-93873200	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:93863000-93867200	Weak transcription	Pancreas	Pancrea
24	chr10:93863000-93870000	Weak transcription	Psoas Muscle	Psoas
25	chr10:93863000-93870200	Weak transcription	Primary T cells from cord blood	blood
26	chr10:93863000-93878600	Weak transcription	Gastric	stomach
27	chr10:93863200-93867200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:93863200-93867400	Weak transcription	Aorta	Aorta
29	chr10:93863200-93869400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:93863400-93866600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:93863400-93867000	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:93863400-93867200	Weak transcription	Left Ventricle	heart
33	chr10:93863400-93867200	Weak transcription	Right Atrium	heart
34	chr10:93863400-93867600	Enhancers	Liver	Liver
35	chr10:93863400-93870000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:93863600-93866800	Weak transcription	Fetal Heart	heart
37	chr10:93863600-93866800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:93863600-93867200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:93863600-93867200	Weak transcription	Right Ventricle	heart
40	chr10:93863600-93869600	Weak transcription	HSMM	muscle
41	chr10:93863600-93870000	Weak transcription	Small Intestine	intestine
42	chr10:93863800-93867200	Weak transcription	Brain Angular Gyrus	brain
43	chr10:93863800-93867200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:93863800-93869800	Weak transcription	Brain Anterior Caudate	brain
45	chr10:93863800-93879200	Weak transcription	GM12878-XiMat	blood
46	chr10:93863800-93881400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr10:93863800-93881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:93864000-93865600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:93864000-93869400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:93864800-93865600	Enhancers	HepG2	liver

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