Variant report

Variant	rs855704
Chromosome Location	chr10:93881916-93881917
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93877142..93879696-chr10:93881033..93883105,2	MCF-7	breast:
2	chr10:93881358..93883169-chr10:93884864..93886864,2	K562	blood:

Variant related genes	Relation type
ENSG00000214549	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10748577	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10786029	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10786031	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786033	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882042	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1099379	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186914	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11186915	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1229578	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1229579	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1622656	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1711849	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1971471	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2254667	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2767654	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2771248	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2798254	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3781229	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3824734	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4642988	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933227	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933228	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4933229	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4933720	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6583804	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701844	0.92[ASN][1000 genomes]
rs701846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7087501	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7090737	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7091853	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7908721	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7919699	0.86[ASN][1000 genomes]
rs7919840	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920520	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs833385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs855698	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855703	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855706	0.86[ASN][1000 genomes]
rs855707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855708	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs855710	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
3	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:93871000-93882400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:93871000-93882400	Weak transcription	Primary T cells from cord blood	blood
6	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:93871600-93882000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:93871800-93884400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:93873600-93882000	Weak transcription	Lung	lung
10	chr10:93873600-93883000	Weak transcription	Right Atrium	heart
11	chr10:93874000-93883000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:93874000-93885000	Weak transcription	Small Intestine	intestine
13	chr10:93874400-93882800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:93874600-93883000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:93875000-93882600	Weak transcription	Fetal Intestine Large	intestine
17	chr10:93875000-93883800	Weak transcription	Fetal Intestine Small	intestine
18	chr10:93878200-93885000	Enhancers	Liver	Liver
19	chr10:93879400-93882000	Weak transcription	Adipose Nuclei	Adipose
20	chr10:93881400-93882200	Enhancers	Left Ventricle	heart
21	chr10:93881400-93882200	Enhancers	Pancreas	Pancrea
22	chr10:93881400-93882400	Enhancers	Right Ventricle	heart
23	chr10:93881400-93885400	Enhancers	Aorta	Aorta
24	chr10:93881400-93885400	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:93881400-93885400	Enhancers	Ovary	ovary
26	chr10:93881400-93885400	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:93881400-93886200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:93881400-93886200	Enhancers	Brain Anterior Caudate	brain
29	chr10:93881400-93886200	Enhancers	Colon Smooth Muscle	Colon
30	chr10:93881400-93886200	Enhancers	Psoas Muscle	Psoas
31	chr10:93881400-93886200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:93881400-93886200	Enhancers	Stomach Smooth Muscle	stomach
33	chr10:93881400-93886400	Enhancers	Fetal Heart	heart
34	chr10:93881400-93886400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:93881600-93882200	Enhancers	Esophagus	oesophagus
36	chr10:93881600-93882200	Enhancers	Gastric	stomach
37	chr10:93881600-93882400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:93881600-93883400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:93881600-93884200	Enhancers	Hela-S3	cervix
40	chr10:93881600-93884800	Flanking Active TSS	HepG2	liver
41	chr10:93881600-93885400	Enhancers	Brain Substantia Nigra	brain
42	chr10:93881600-93885800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:93881800-93882000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr10:93881800-93882200	Enhancers	Brain Angular Gyrus	brain
45	chr10:93881800-93886400	Enhancers	Stomach Mucosa	stomach

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