Variant report

Variant	rs10748577
Chromosome Location	chr10:94068365-94068366
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10748578	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10748579	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748580	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786029	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10786031	0.82[EUR][1000 genomes]
rs10786033	0.88[EUR][1000 genomes]
rs10786037	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10882028	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10882042	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11186914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1971471	0.81[EUR][1000 genomes]
rs2245994	0.92[ASN][1000 genomes]
rs2253904	0.91[ASN][1000 genomes]
rs2254667	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2255718	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2265195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2488793	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2771248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2771253	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2771256	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2771265	0.88[ASN][1000 genomes]
rs2798254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781229	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs3824734	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4933227	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4933228	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4933229	0.87[EUR][1000 genomes]
rs4933720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4999831	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701846	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7078559	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7087501	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7090737	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7091853	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7094433	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7908721	0.87[EUR][1000 genomes]
rs7920520	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs855699	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs855702	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs855704	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs855707	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs913649	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9943333	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94071000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
4	chr10:94052400-94070800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:94052400-94080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
10	chr10:94052600-94070800	Weak transcription	NHDF-Ad	bronchial
11	chr10:94052600-94071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:94052600-94077200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:94052600-94102000	Weak transcription	NHLF	lung
14	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
15	chr10:94052800-94072000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:94052800-94072800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:94052800-94087400	Weak transcription	K562	blood
18	chr10:94052800-94088600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:94053000-94070800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:94053200-94071400	Weak transcription	HMEC	breast
21	chr10:94053200-94074600	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:94053200-94086800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:94053400-94109400	Weak transcription	Fetal Brain Male	brain
24	chr10:94054400-94077400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:94054600-94070800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:94054600-94071000	Weak transcription	NH-A	brain
27	chr10:94054600-94071600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:94054600-94101400	Weak transcription	HSMM	muscle
29	chr10:94054800-94070800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:94054800-94072800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:94054800-94087200	Weak transcription	NHEK	skin
32	chr10:94055000-94080600	Weak transcription	Hela-S3	cervix
33	chr10:94056800-94080600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:94056800-94087600	Weak transcription	A549	lung
35	chr10:94057200-94073800	Weak transcription	Right Atrium	heart
36	chr10:94057400-94072800	Weak transcription	Lung	lung
37	chr10:94059200-94070800	Weak transcription	Fetal Brain Female	brain
38	chr10:94060000-94071400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:94060200-94070000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:94060600-94071000	Weak transcription	HUVEC	blood vessel
41	chr10:94061200-94070600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:94061200-94070600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:94061200-94071400	Weak transcription	Fetal Lung	lung
44	chr10:94061200-94072600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:94061400-94070800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr10:94061400-94070800	Weak transcription	Liver	Liver
47	chr10:94061400-94071200	Weak transcription	Osteobl	bone
48	chr10:94061600-94070800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:94061600-94070800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:94061600-94070800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links