Variant report

Variant	rs4999831
Chromosome Location	chr10:94091864-94091865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10748577	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748578	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748579	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786033	0.84[EUR][1000 genomes]
rs10786037	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882042	0.83[EUR][1000 genomes]
rs11186914	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186915	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2245994	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2253904	0.85[ASN][1000 genomes]
rs2254667	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2255718	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2265195	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2488793	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2771248	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2771253	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2771256	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2771265	0.82[ASN][1000 genomes]
rs2798254	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781229	0.82[EUR][1000 genomes]
rs3824734	0.83[EUR][1000 genomes]
rs4933228	0.83[EUR][1000 genomes]
rs4933229	0.83[EUR][1000 genomes]
rs4933720	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7091853	0.83[EUR][1000 genomes]
rs7094433	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7908721	0.83[EUR][1000 genomes]
rs913649	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950732	0.83[EUR][1000 genomes]
rs9943333	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
3	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
7	chr10:94052600-94102000	Weak transcription	NHLF	lung
8	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
9	chr10:94053400-94109400	Weak transcription	Fetal Brain Male	brain
10	chr10:94054600-94101400	Weak transcription	HSMM	muscle
11	chr10:94063600-94109400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:94063600-94111800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:94064000-94101400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:94064000-94109200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:94065800-94093000	Weak transcription	Psoas Muscle	Psoas
16	chr10:94066200-94101600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:94067000-94113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:94070800-94094800	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:94071800-94108200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:94072000-94102200	Weak transcription	NHDF-Ad	bronchial
21	chr10:94072200-94109000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:94072200-94109400	Weak transcription	Aorta	Aorta
23	chr10:94072400-94101600	Weak transcription	NH-A	brain
24	chr10:94072600-94094800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:94072800-94101200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:94073000-94101800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:94073600-94101600	Weak transcription	Spleen	Spleen
28	chr10:94074000-94101600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:94074000-94101600	Weak transcription	Right Ventricle	heart
30	chr10:94074000-94102000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:94074000-94109200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:94077800-94100000	Weak transcription	Fetal Thymus	thymus
33	chr10:94078400-94101200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:94078400-94106800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:94078800-94100000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:94078800-94100400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:94078800-94101600	Weak transcription	Thymus	Thymus
38	chr10:94079000-94100200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:94079000-94102200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:94079000-94102800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:94081000-94095000	Weak transcription	Fetal Intestine Large	intestine
42	chr10:94081000-94102200	Weak transcription	Fetal Kidney	kidney
43	chr10:94081000-94109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:94081000-94112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:94081200-94101000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:94081200-94101400	Weak transcription	GM12878-XiMat	blood
47	chr10:94081200-94105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:94081400-94094400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:94081400-94094600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:94081400-94096200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links