Variant report

Variant	rs3781229
Chromosome Location	chr10:94000815-94000816
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93998891..94002756-chr10:94046633..94048810,3	MCF-7	breast:
2	chr10:93997153..94001150-chr10:94050454..94053150,4	K562	blood:
3	chr10:94000034..94002806-chr10:94032423..94034711,2	MCF-7	breast:
4	chr10:93993398..93996089-chr10:93999200..94001184,3	K562	blood:
5	chr10:93997118..94002694-chr10:94002870..94008304,8	K562	blood:
6	chr10:93995692..93998257-chr10:93998323..94000901,2	MCF-7	breast:
7	chr10:94000412..94002917-chr10:94049216..94050934,2	MCF-7	breast:
8	chr10:93997685..94001511-chr10:94048071..94053185,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10748577	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10748578	0.84[EUR][1000 genomes]
rs10748579	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10748580	0.82[EUR][1000 genomes]
rs10786029	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10786031	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786033	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786037	0.96[CEU][hapmap]
rs10882028	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1099379	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11186914	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186915	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1229578	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1229579	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1622656	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1971471	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2254667	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2255718	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2265195	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2488793	0.81[EUR][1000 genomes]
rs2767654	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2771248	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2771253	0.85[EUR][1000 genomes]
rs2771256	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2771265	0.81[ASN][1000 genomes]
rs2798254	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs3824734	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4642988	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933227	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933229	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933720	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4999831	0.82[EUR][1000 genomes]
rs6583804	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs701846	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7071943	0.85[ASN][1000 genomes]
rs7078559	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7087501	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7090737	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs7091853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7094433	0.83[EUR][1000 genomes]
rs7897555	0.87[ASN][1000 genomes]
rs7908721	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914436	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920520	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs833385	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs855698	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs855699	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs855702	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs855703	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs855704	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs855707	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs855710	0.81[ASN][1000 genomes]
rs913649	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs9943333	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93997000-94003400	Active TSS	Right Atrium	heart
2	chr10:93997400-94001200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:93997400-94003200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:93997800-94001200	Active TSS	Esophagus	oesophagus
5	chr10:93997800-94002400	Active TSS	Left Ventricle	heart
6	chr10:93998000-94001000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr10:93998000-94001200	Active TSS	Pancreas	Pancrea
8	chr10:93998000-94001400	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr10:93998000-94003400	Active TSS	Psoas Muscle	Psoas
10	chr10:93998200-94001200	Active TSS	Ovary	ovary
11	chr10:93998200-94003400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr10:93998200-94003400	Active TSS	Right Ventricle	heart
13	chr10:93998400-94001000	Active TSS	Fetal Kidney	kidney
14	chr10:93998800-94001000	Active TSS	Brain Hippocampus Middle	brain
15	chr10:93998800-94001200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr10:93998800-94001400	Active TSS	HSMMtube	muscle
17	chr10:93998800-94003400	Active TSS	Brain Angular Gyrus	brain
18	chr10:93999000-94001000	Active TSS	Brain Cingulate Gyrus	brain
19	chr10:93999000-94001000	Active TSS	Fetal Intestine Large	intestine
20	chr10:93999000-94001000	Active TSS	Fetal Stomach	stomach
21	chr10:93999000-94001000	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr10:93999000-94001000	Active TSS	Stomach Mucosa	stomach
23	chr10:93999000-94001200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:93999000-94001200	Active TSS	Aorta	Aorta
25	chr10:93999000-94001200	Active TSS	Brain Anterior Caudate	brain
26	chr10:93999000-94001200	Active TSS	NHDF-Ad	bronchial
27	chr10:93999000-94001400	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr10:93999200-94001000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:93999200-94001000	Active TSS	Fetal Intestine Small	intestine
30	chr10:93999200-94001000	Active TSS	A549	lung
31	chr10:93999200-94001200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr10:93999200-94001200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
33	chr10:93999200-94001200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr10:93999200-94001200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr10:93999200-94001200	Active TSS	Brain Substantia Nigra	brain
36	chr10:93999200-94001400	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr10:93999400-94001000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:93999400-94001000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:93999400-94001000	Active TSS	Fetal Muscle Trunk	muscle
40	chr10:93999400-94001200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr10:93999400-94001200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:93999400-94001200	Active TSS	Brain Germinal Matrix	brain
43	chr10:93999400-94001200	Active TSS	Duodenum Mucosa	Duodenum
44	chr10:93999400-94001200	Active TSS	Osteobl	bone
45	chr10:93999400-94001400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:93999400-94001400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:93999400-94003400	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:93999600-94001200	Active TSS	Stomach Smooth Muscle	stomach
49	chr10:93999800-94001000	Active TSS	Colonic Mucosa	Colon
50	chr10:93999800-94001200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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