Variant report

Variant	rs7071943
Chromosome Location	chr10:93956552-93956553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10786029	0.86[ASN][1000 genomes]
rs10786031	0.86[ASN][1000 genomes]
rs10786033	0.86[ASN][1000 genomes]
rs10882028	0.83[ASN][1000 genomes]
rs1971471	0.83[ASN][1000 genomes]
rs3781229	0.85[ASN][1000 genomes]
rs3824734	0.85[ASN][1000 genomes]
rs4642988	0.84[ASN][1000 genomes]
rs4933227	0.88[ASN][1000 genomes]
rs4933228	0.83[ASN][1000 genomes]
rs4933229	0.83[ASN][1000 genomes]
rs6583804	0.84[ASN][1000 genomes]
rs7078559	0.84[ASN][1000 genomes]
rs7087501	0.84[ASN][1000 genomes]
rs7090737	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7091853	0.85[ASN][1000 genomes]
rs7897555	0.85[ASN][1000 genomes]
rs7908721	0.82[ASN][1000 genomes]
rs7920520	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
4	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:93927000-93966200	Weak transcription	Ovary	ovary
6	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
13	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
14	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:93930000-93958200	Weak transcription	Hela-S3	cervix
16	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:93936600-93958000	Weak transcription	Small Intestine	intestine
18	chr10:93940200-93971200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:93940600-93958400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:93940600-93970800	Weak transcription	Fetal Stomach	stomach
21	chr10:93941600-93958000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:93941600-93958000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:93941800-93958000	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:93941800-93968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:93941800-93971200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:93943600-93958200	Weak transcription	K562	blood
27	chr10:93945800-93963800	Weak transcription	Fetal Brain Female	brain
28	chr10:93946600-93964000	Weak transcription	Left Ventricle	heart
29	chr10:93947600-93958200	Weak transcription	Brain Substantia Nigra	brain
30	chr10:93947800-93967800	Weak transcription	GM12878-XiMat	blood
31	chr10:93949000-93961800	Weak transcription	Primary T cells from cord blood	blood
32	chr10:93949800-93958200	Weak transcription	Liver	Liver
33	chr10:93952400-93958000	Weak transcription	HepG2	liver
34	chr10:93952400-93963400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr10:93952600-93966200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr10:93956200-93967000	Weak transcription	Fetal Heart	heart

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