Variant report

Variant	rs7091853
Chromosome Location	chr10:93997695-93997696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93992827..93994383-chr10:93997027..93998901,2	K562	blood:
2	chr10:93969866..93972797-chr10:93997351..93999951,2	MCF-7	breast:
3	chr10:93997153..94001150-chr10:94050454..94053150,4	K562	blood:
4	chr10:93995692..93998257-chr10:93998323..94000901,2	MCF-7	breast:
5	chr10:93997118..94002694-chr10:94002870..94008304,8	K562	blood:
6	chr10:93997685..94001511-chr10:94048071..94053185,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10748577	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10748578	0.86[EUR][1000 genomes]
rs10748579	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10748580	0.83[EUR][1000 genomes]
rs10786029	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10786031	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786033	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786037	0.96[CEU][hapmap]
rs10882028	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1099379	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs11186914	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186915	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1229578	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1229579	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1622656	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1711849	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1971471	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254667	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2255718	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2265195	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2488793	0.83[EUR][1000 genomes]
rs2767654	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2771248	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2771253	0.87[EUR][1000 genomes]
rs2771256	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2771265	0.81[ASN][1000 genomes]
rs2798254	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs3781229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824734	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642988	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933227	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933229	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933720	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4999831	0.83[EUR][1000 genomes]
rs6583804	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701846	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7071943	0.85[ASN][1000 genomes]
rs7078559	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7087501	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7090737	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7094433	0.85[EUR][1000 genomes]
rs7897555	0.89[ASN][1000 genomes]
rs7908721	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914436	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920520	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs833385	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs855698	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855699	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855702	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855703	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855704	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855707	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855708	0.81[ASN][1000 genomes]
rs855710	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs913649	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9943333	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
2	chr10:93969200-93997800	Weak transcription	Pancreas	Pancrea
3	chr10:93969200-93998600	Weak transcription	Lung	lung
4	chr10:93969600-93997800	Weak transcription	Esophagus	oesophagus
5	chr10:93971400-93997800	Weak transcription	Stomach Mucosa	stomach
6	chr10:93975400-93998000	Weak transcription	Colonic Mucosa	Colon
7	chr10:93976600-93999000	Weak transcription	Aorta	Aorta
8	chr10:93976800-93998800	Weak transcription	Gastric	stomach
9	chr10:93977000-93998400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:93977600-93998000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:93979400-93998600	Weak transcription	Primary T cells from cord blood	blood
12	chr10:93982600-93997800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:93983200-93998400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:93983200-93998400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:93983400-93997800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:93983400-93998000	Weak transcription	HSMMtube	muscle
17	chr10:93983400-93998200	Weak transcription	HSMM	muscle
18	chr10:93983600-93998400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:93985000-93998800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:93987000-93997800	Weak transcription	Ovary	ovary
21	chr10:93988200-93998600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:93988800-93997800	Weak transcription	Thymus	Thymus
23	chr10:93989400-93998600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:93989600-93997800	Weak transcription	Placenta	Placenta
25	chr10:93991400-93997800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:93991400-93997800	Weak transcription	Psoas Muscle	Psoas
27	chr10:93991400-93997800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:93991400-93997800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:93991400-93997800	Weak transcription	Spleen	Spleen
30	chr10:93991400-93998000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:93991400-93998000	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:93991400-93998000	Weak transcription	Fetal Stomach	stomach
33	chr10:93991400-93999000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:93991600-93997800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:93992600-93998600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:93992800-93997800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr10:93993200-93997800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:93993200-93997800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:93993200-93998000	Weak transcription	HMEC	breast
40	chr10:93993400-93998000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:93993600-93998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:93994600-93997800	Weak transcription	Left Ventricle	heart
43	chr10:93994600-93998000	Weak transcription	Fetal Intestine Small	intestine
44	chr10:93994800-93998600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:93995200-93997800	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr10:93995800-93997800	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:93996000-93997800	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr10:93996400-93997800	Active TSS	Brain Anterior Caudate	brain
49	chr10:93996400-93998200	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr10:93996400-93998400	Enhancers	Fetal Brain Male	brain

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