Variant report

Variant	rs855708
Chromosome Location	chr10:93879078-93879079
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10786029	0.90[ASN][1000 genomes]
rs10786031	0.82[ASN][1000 genomes]
rs10786033	0.82[ASN][1000 genomes]
rs10882028	0.86[ASN][1000 genomes]
rs1099379	0.84[ASN][1000 genomes]
rs1229578	0.94[ASN][1000 genomes]
rs1229579	0.92[ASN][1000 genomes]
rs1622656	0.88[ASN][1000 genomes]
rs1711849	0.92[ASN][1000 genomes]
rs2767654	0.90[ASN][1000 genomes]
rs3824734	0.81[ASN][1000 genomes]
rs4642988	0.88[ASN][1000 genomes]
rs4933227	0.85[ASN][1000 genomes]
rs6583804	0.88[ASN][1000 genomes]
rs701844	0.87[ASN][1000 genomes]
rs701846	0.95[ASN][1000 genomes]
rs7078559	0.88[ASN][1000 genomes]
rs7087501	0.88[ASN][1000 genomes]
rs7090737	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7091853	0.81[ASN][1000 genomes]
rs7897555	0.81[ASN][1000 genomes]
rs7919699	0.81[ASN][1000 genomes]
rs7919840	0.88[ASN][1000 genomes]
rs7920520	0.83[ASN][1000 genomes]
rs833385	0.86[ASN][1000 genomes]
rs855698	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs855699	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs855702	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs855703	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs855704	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs855706	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs855707	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs855710	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv948137	chr10:93876652-93879263	Weak transcription Enhancers Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
2	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
3	chr10:93862000-93881400	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:93862000-93881400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
6	chr10:93863800-93879200	Weak transcription	GM12878-XiMat	blood
7	chr10:93863800-93881400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:93863800-93881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:93867400-93881800	Weak transcription	Stomach Mucosa	stomach
10	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:93870800-93881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:93871000-93881600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:93871000-93881800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:93871000-93882400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:93871000-93882400	Weak transcription	Primary T cells from cord blood	blood
16	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:93871400-93881400	Weak transcription	Brain Anterior Caudate	brain
18	chr10:93871600-93882000	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:93871800-93881400	Weak transcription	Aorta	Aorta
20	chr10:93871800-93881600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:93871800-93884400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:93872400-93881400	Weak transcription	Left Ventricle	heart
23	chr10:93873000-93881400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:93873600-93881400	Weak transcription	Ovary	ovary
25	chr10:93873600-93882000	Weak transcription	Lung	lung
26	chr10:93873600-93883000	Weak transcription	Right Atrium	heart
27	chr10:93874000-93881400	Weak transcription	Right Ventricle	heart
28	chr10:93874000-93883000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:93874000-93885000	Weak transcription	Small Intestine	intestine
30	chr10:93874200-93881400	Weak transcription	Fetal Heart	heart
31	chr10:93874400-93882800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:93874600-93883000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:93875000-93882600	Weak transcription	Fetal Intestine Large	intestine
35	chr10:93875000-93883800	Weak transcription	Fetal Intestine Small	intestine
36	chr10:93878200-93885000	Enhancers	Liver	Liver
37	chr10:93878400-93879200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:93878400-93879400	Enhancers	Psoas Muscle	Psoas
39	chr10:93878400-93881600	Enhancers	HepG2	liver
40	chr10:93878800-93879200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:93878800-93881400	Weak transcription	Pancreas	Pancrea
42	chr10:93878800-93881800	Weak transcription	Brain Angular Gyrus	brain
43	chr10:93879000-93879200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:93879000-93879400	Enhancers	Adipose Nuclei	Adipose
45	chr10:93879000-93879400	Enhancers	Brain Substantia Nigra	brain
46	chr10:93879000-93881600	Weak transcription	Gastric	stomach

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