Variant report

Variant	rs10799283
Chromosome Location	chr1:225102208-225102209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10399821	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10399941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10495231	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10799282	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10915733	0.96[ASN][1000 genomes]
rs10915743	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10915744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10915745	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10915747	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915751	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915761	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10915762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10915763	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11487461	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12060676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12061172	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12061874	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12067756	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12068731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12068939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12069537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12071453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12072713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12073050	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12074130	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12077191	0.96[ASN][1000 genomes]
rs12078470	1.00[AMR][1000 genomes]
rs12078559	1.00[AMR][1000 genomes]
rs12082397	0.92[ASN][1000 genomes]
rs12086122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12086373	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12088836	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12090519	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12092671	1.00[AMR][1000 genomes]
rs12093086	0.92[ASN][1000 genomes]
rs12093545	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12095812	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12095841	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12097532	0.92[ASN][1000 genomes]
rs12097577	0.92[ASN][1000 genomes]
rs1482278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16858094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16858965	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2244108	1.00[ASN][1000 genomes]
rs2244109	1.00[ASN][1000 genomes]
rs2244198	1.00[ASN][1000 genomes]
rs2254430	1.00[ASN][1000 genomes]
rs2406099	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2449279	0.85[ASN][1000 genomes]
rs2449305	0.85[ASN][1000 genomes]
rs2449306	0.85[ASN][1000 genomes]
rs2456344	0.85[ASN][1000 genomes]
rs2456350	0.85[ASN][1000 genomes]
rs2456354	0.85[ASN][1000 genomes]
rs2501103	0.85[ASN][1000 genomes]
rs2662910	1.00[ASN][1000 genomes]
rs2662911	1.00[ASN][1000 genomes]
rs2662913	1.00[ASN][1000 genomes]
rs2802546	1.00[ASN][1000 genomes]
rs2802547	0.86[ASN][1000 genomes]
rs2802567	1.00[ASN][1000 genomes]
rs2802736	1.00[ASN][1000 genomes]
rs28510743	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28673436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4256778	1.00[ASN][1000 genomes]
rs55708629	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56302122	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57262741	1.00[AMR][1000 genomes]
rs59318794	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60619295	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6662177	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6666025	1.00[AMR][1000 genomes]
rs6680233	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6689287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6694400	1.00[ASN][1000 genomes]
rs6700281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs74146611	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74149417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74149420	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74149426	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs74149428	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs74149429	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs74149436	0.85[ASN][1000 genomes]
rs7418261	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7527885	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225101600-225103800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:225102200-225102400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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