Variant report

Variant	rs10828441
Chromosome Location	chr10:23685456-23685457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10828437	0.93[EUR][1000 genomes]
rs10828450	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1398025	0.84[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012456	1.00[CEU][hapmap]
rs4019731	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4636559	0.85[EUR][1000 genomes]
rs4747469	1.00[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4748878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482272	0.93[EUR][1000 genomes]
rs7068798	0.91[EUR][1000 genomes]
rs7076002	0.91[EUR][1000 genomes]
rs7087405	0.93[EUR][1000 genomes]
rs7095622	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73602542	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7918621	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10828441	PDSS1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23684800-23688800	Enhancers	Stomach Mucosa	stomach
2	chr10:23685000-23686200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23685200-23686000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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