Variant report

Variant	rs4019731
Chromosome Location	chr10:23673298-23673299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10828437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828441	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828450	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs1398025	0.84[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2012456	0.95[CEU][hapmap];0.85[YRI][hapmap]
rs4636559	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4747469	0.95[CEU][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs4748878	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6482272	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7068798	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7076002	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7087405	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7095622	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73602542	0.90[EUR][1000 genomes]
rs7918621	0.95[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4019731	PDSS1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23670800-23673400	Weak transcription	Hela-S3	cervix
2	chr10:23671000-23679600	Weak transcription	Placenta	Placenta
3	chr10:23672000-23673400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:23672000-23674200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:23672200-23674200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:23672200-23674200	Enhancers	HMEC	breast
7	chr10:23672400-23673600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:23673200-23674200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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