Variant report

Variant	rs7918621
Chromosome Location	chr10:23688686-23688687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr10:23688541-23688715	HepG2	liver:	n/a	n/a
2	RCOR1	chr10:23688416-23689301	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23681932..23683640-chr10:23685915..23688818,2	K562	blood:

Variant related genes	Relation type
ENSG00000238515	TF binding region
ENSG00000264574	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10828437	0.93[EUR][1000 genomes]
rs10828441	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828450	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1398025	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012456	1.00[CEU][hapmap]
rs4019731	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4636559	0.85[EUR][1000 genomes]
rs4747469	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748878	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482272	0.93[EUR][1000 genomes]
rs7068798	0.91[EUR][1000 genomes]
rs7076002	0.91[EUR][1000 genomes]
rs7087405	0.93[EUR][1000 genomes]
rs7095622	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73602542	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23684800-23688800	Enhancers	Stomach Mucosa	stomach
2	chr10:23687400-23688800	Enhancers	Placenta	Placenta
3	chr10:23687400-23688800	Enhancers	Gastric	stomach
4	chr10:23687800-23688800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:23688200-23688800	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:23688200-23688800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:23688400-23689000	Enhancers	Colon Smooth Muscle	Colon
8	chr10:23688400-23689000	Flanking Active TSS	Fetal Heart	heart
9	chr10:23688400-23689000	Enhancers	Pancreas	Pancrea
10	chr10:23688400-23689000	Enhancers	Hela-S3	cervix
11	chr10:23688400-23689000	Flanking Active TSS	HSMM	muscle
12	chr10:23688400-23689400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:23688400-23689400	Enhancers	NH-A	brain
14	chr10:23688400-23689400	Enhancers	Osteobl	bone
15	chr10:23688600-23688800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:23688600-23688800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr10:23688600-23689000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:23688600-23689000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr10:23688600-23689000	Enhancers	Stomach Smooth Muscle	stomach
20	chr10:23688600-23689000	Flanking Active TSS	HSMMtube	muscle
21	chr10:23688600-23689000	Enhancers	NHLF	lung
22	chr10:23688600-23690000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:23688600-23691400	Weak transcription	Left Ventricle	heart
24	chr10:23688600-23691600	Weak transcription	Psoas Muscle	Psoas

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