Variant report

Variant	rs10828437
Chromosome Location	chr10:23674160-23674161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23673479..23676252-chr10:23691653..23693360,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10458684	0.83[ASN][1000 genomes]
rs10458696	0.91[ASN][1000 genomes]
rs10458697	0.91[ASN][1000 genomes]
rs10458699	0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10458700	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10458701	0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10458702	0.90[ASN][1000 genomes]
rs10764401	0.97[ASN][1000 genomes]
rs10828441	0.93[EUR][1000 genomes]
rs10828442	0.90[ASN][1000 genomes]
rs10828443	0.90[ASN][1000 genomes]
rs10828444	0.90[ASN][1000 genomes]
rs10828445	0.90[ASN][1000 genomes]
rs10828446	0.91[ASN][1000 genomes]
rs10828447	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10828448	0.91[ASN][1000 genomes]
rs10828449	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10828450	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs11013439	0.90[ASN][1000 genomes]
rs11013440	0.90[ASN][1000 genomes]
rs11013442	0.90[ASN][1000 genomes]
rs11013443	0.90[ASN][1000 genomes]
rs11013445	0.91[ASN][1000 genomes]
rs11013448	0.92[ASN][1000 genomes]
rs11013449	0.92[ASN][1000 genomes]
rs11013450	0.92[ASN][1000 genomes]
rs11013451	0.89[ASN][1000 genomes]
rs11013452	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11013453	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11013454	0.92[ASN][1000 genomes]
rs11013456	0.92[ASN][1000 genomes]
rs11013458	0.92[ASN][1000 genomes]
rs1110308	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1110309	0.92[ASN][1000 genomes]
rs11595979	0.92[ASN][1000 genomes]
rs11598035	0.90[ASN][1000 genomes]
rs11598831	0.92[ASN][1000 genomes]
rs11817475	0.91[ASN][1000 genomes]
rs11819219	0.92[ASN][1000 genomes]
rs12221155	0.83[ASN][1000 genomes]
rs12221365	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12573322	0.92[ASN][1000 genomes]
rs1398025	0.96[EUR][1000 genomes]
rs1511827	0.84[ASN][1000 genomes]
rs2012456	0.95[CEU][hapmap]
rs34324518	0.92[ASN][1000 genomes]
rs34842656	0.92[ASN][1000 genomes]
rs35353501	0.92[ASN][1000 genomes]
rs35634725	0.92[ASN][1000 genomes]
rs4019731	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4636559	0.90[EUR][1000 genomes]
rs4747469	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs4748878	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6482272	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7068798	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7076002	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7087405	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7095622	0.96[EUR][1000 genomes]
rs72648297	0.90[ASN][1000 genomes]
rs72648298	0.91[ASN][1000 genomes]
rs72648299	0.91[ASN][1000 genomes]
rs72648300	0.91[ASN][1000 genomes]
rs72648301	0.92[ASN][1000 genomes]
rs73602542	0.90[EUR][1000 genomes]
rs7900169	0.92[ASN][1000 genomes]
rs7918621	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs883850	0.90[ASN][1000 genomes]
rs883851	0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23671000-23679600	Weak transcription	Placenta	Placenta
2	chr10:23672000-23674200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:23672200-23674200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:23672200-23674200	Enhancers	HMEC	breast
5	chr10:23673200-23674200	Enhancers	NHEK	skin
6	chr10:23674000-23677200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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