Variant report

Variant	rs10828450
Chromosome Location	chr10:23691638-23691639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10458698	0.93[ASN][1000 genomes]
rs10828437	0.91[EUR][1000 genomes]
rs10828441	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1398025	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2012456	1.00[CEU][hapmap]
rs4019731	0.91[EUR][1000 genomes]
rs4636559	0.83[EUR][1000 genomes]
rs4747469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748878	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6482272	0.91[EUR][1000 genomes]
rs7068798	0.90[EUR][1000 genomes]
rs7076002	0.89[EUR][1000 genomes]
rs7087405	0.91[EUR][1000 genomes]
rs7095622	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73602542	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7918621	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23688800-23691800	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:23688800-23694800	Weak transcription	Placenta	Placenta
3	chr10:23689000-23693400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:23689400-23691800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:23689400-23701000	Weak transcription	Osteobl	bone
6	chr10:23690400-23691800	Weak transcription	Fetal Heart	heart
7	chr10:23690400-23693000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:23691400-23692800	Enhancers	Stomach Mucosa	stomach
9	chr10:23691400-23693000	Enhancers	Left Ventricle	heart
10	chr10:23691400-23693800	Enhancers	HSMM	muscle
11	chr10:23691600-23692000	Weak transcription	HSMMtube	muscle
12	chr10:23691600-23692800	Enhancers	Psoas Muscle	Psoas
13	chr10:23691600-23693800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:23691600-23693800	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links