The 2.0 version of rSNPBase

Variant report

Variant rs10873949
Chromosome Location chr1:78008104-78008105
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77983000-78009200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:77998000-78014000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr1:77999600-78009600 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr1:78000000-78011600 Weak transcription Primary T cells fromperipheralblood blood
5 chr1:78000000-78030600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:78000000-78031200 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr1:78004600-78008200 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr1:78004800-78010800 Strong transcription Primary T helper naive cells fromperipheralblood blood
9 chr1:78005600-78010200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:78005600-78010400 Weak transcription Fetal Heart heart
11 chr1:78005600-78014000 Weak transcription Right Ventricle heart
12 chr1:78005600-78034800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:78005800-78010800 Weak transcription Brain Angular Gyrus brain
14 chr1:78005800-78011000 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr1:78005800-78014000 Weak transcription Right Atrium heart
16 chr1:78005800-78026200 Weak transcription Left Ventricle heart
17 chr1:78005800-78032400 Weak transcription Psoas Muscle Psoas
18 chr1:78006000-78010000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:78006000-78011400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr1:78006000-78013600 Weak transcription Brain Inferior Temporal Lobe brain
21 chr1:78006000-78014000 Weak transcription Brain Substantia Nigra brain
22 chr1:78006000-78022400 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr1:78006000-78026200 Weak transcription Fetal Muscle Leg muscle
24 chr1:78006000-78031000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr1:78006200-78008200 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:78006200-78011400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr1:78006200-78024400 Weak transcription HSMMtube muscle
28 chr1:78006200-78027200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:78006200-78064400 Weak transcription Stomach Mucosa stomach
30 chr1:78006400-78009200 Weak transcription Brain Anterior Caudate brain
31 chr1:78006400-78010600 Weak transcription Brain Hippocampus Middle brain
32 chr1:78006400-78011200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:78006400-78011400 Weak transcription Primary hematopoietic stem cells blood
34 chr1:78006400-78011600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr1:78006600-78008200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:78006600-78008200 Weak transcription NHLF lung
37 chr1:78006600-78008400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:78006600-78008600 Weak transcription Primary monocytes fromperipheralblood blood
39 chr1:78006600-78009000 Enhancers Osteobl bone
40 chr1:78006800-78008400 Strong transcription HSMM muscle
41 chr1:78006800-78009800 Weak transcription Primary T cells from cord blood blood
42 chr1:78007000-78008400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:78007000-78009800 Enhancers Hela-S3 cervix
44 chr1:78007000-78010000 Genic enhancers Muscle Satellite Cultured Cells --
45 chr1:78007200-78009400 Weak transcription A549 lung
46 chr1:78007200-78011400 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr1:78007400-78008400 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr1:78007400-78010400 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:78007600-78008600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:78007600-78009800 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015