The 2.0 version of rSNPBase

Variant report

Variant rs3738079
Chromosome Location chr1:78001287-78001288
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77983000-78009200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:77996800-78001800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:77998000-78014000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:77998200-78005000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr1:77999200-78002000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:77999200-78004600 Enhancers NH-A brain
7 chr1:77999400-78001600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:77999600-78003800 Weak transcription Fetal Muscle Leg muscle
9 chr1:77999600-78004000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:77999600-78009600 Weak transcription Primary T regulatory cells fromperipheralblood blood
11 chr1:77999800-78001600 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr1:77999800-78005200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr1:78000000-78001400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:78000000-78001400 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr1:78000000-78001600 Weak transcription HMEC breast
16 chr1:78000000-78001600 Weak transcription HSMM muscle
17 chr1:78000000-78002000 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr1:78000000-78002000 Weak transcription Brain Cingulate Gyrus brain
19 chr1:78000000-78002200 Weak transcription HSMMtube muscle
20 chr1:78000000-78002600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:78000000-78003600 Weak transcription Liver Liver
22 chr1:78000000-78003800 Genic enhancers NHDF-Ad bronchial
23 chr1:78000000-78004400 Weak transcription Fetal Kidney kidney
24 chr1:78000000-78005000 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:78000000-78011600 Weak transcription Primary T cells fromperipheralblood blood
26 chr1:78000000-78030600 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:78000000-78031200 Weak transcription Primary T killer naive cells fromperipheralblood blood
28 chr1:78000200-78002000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:78000200-78002200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:78000200-78002200 Weak transcription A549 lung
31 chr1:78000200-78002400 Weak transcription Brain Inferior Temporal Lobe brain
32 chr1:78000200-78003000 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr1:78000200-78004600 Weak transcription Brain Angular Gyrus brain
34 chr1:78000200-78004600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr1:78000200-78004600 Weak transcription Brain Substantia Nigra brain
36 chr1:78000200-78005000 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr1:78000200-78005000 Weak transcription Brain Anterior Caudate brain
38 chr1:78000400-78002000 Weak transcription Brain Hippocampus Middle brain
39 chr1:78000600-78001400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:78000600-78002000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:78000600-78002400 Weak transcription NHLF lung
42 chr1:78000800-78002200 Weak transcription Osteobl bone
43 chr1:78000800-78002400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr1:78000800-78006800 Strong transcription Primary T cells from cord blood blood
45 chr1:78001000-78001400 Weak transcription NHEK skin
46 chr1:78001000-78001600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:78001000-78002000 Weak transcription HUVEC blood vessel
48 chr1:78001000-78004800 Enhancers Hela-S3 cervix
49 chr1:78001000-78004800 Weak transcription Monocytes-CD14+_RO01746 blood
50 chr1:78001000-78005000 Weak transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015