Variant report

Variant rs6696083
Chromosome Location chr1:78006490-78006491
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77983000-78009200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:77998000-78014000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr1:77999600-78009600 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr1:78000000-78011600 Weak transcription Primary T cells fromperipheralblood blood
5 chr1:78000000-78030600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:78000000-78031200 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr1:78000800-78006800 Strong transcription Primary T cells from cord blood blood
8 chr1:78001400-78006600 Enhancers NHEK skin
9 chr1:78001600-78006600 Enhancers HMEC breast
10 chr1:78001800-78006600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:78004200-78007800 Strong transcription Primary T helper cells PMA-I stimulated --
12 chr1:78004400-78007600 Enhancers GM12878-XiMat blood
13 chr1:78004600-78006600 Enhancers Primary hematopoietic stem cells short term culture blood
14 chr1:78004600-78006600 Flanking Active TSS Osteobl bone
15 chr1:78004600-78008200 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr1:78004800-78006600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:78004800-78007400 Enhancers Monocytes-CD14+_RO01746 blood
18 chr1:78004800-78010800 Strong transcription Primary T helper naive cells fromperipheralblood blood
19 chr1:78005000-78006600 Enhancers Primary monocytes fromperipheralblood blood
20 chr1:78005000-78007400 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr1:78005200-78007400 Enhancers Placenta Placenta
22 chr1:78005200-78008000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:78005400-78006600 Enhancers NHLF lung
24 chr1:78005400-78006800 Enhancers NHDF-Ad bronchial
25 chr1:78005400-78007000 Enhancers Muscle Satellite Cultured Cells --
26 chr1:78005400-78007000 Weak transcription Fetal Kidney kidney
27 chr1:78005400-78007600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:78005600-78007400 Enhancers Primary B cells from peripheral blood blood
29 chr1:78005600-78010200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:78005600-78010400 Weak transcription Fetal Heart heart
31 chr1:78005600-78014000 Weak transcription Right Ventricle heart
32 chr1:78005600-78034800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr1:78005800-78006600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:78005800-78010800 Weak transcription Brain Angular Gyrus brain
35 chr1:78005800-78011000 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr1:78005800-78014000 Weak transcription Right Atrium heart
37 chr1:78005800-78026200 Weak transcription Left Ventricle heart
38 chr1:78005800-78032400 Weak transcription Psoas Muscle Psoas
39 chr1:78006000-78006600 Enhancers NH-A brain
40 chr1:78006000-78007800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:78006000-78010000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr1:78006000-78011400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:78006000-78013600 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:78006000-78014000 Weak transcription Brain Substantia Nigra brain
45 chr1:78006000-78022400 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr1:78006000-78026200 Weak transcription Fetal Muscle Leg muscle
47 chr1:78006000-78031000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:78006200-78006600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:78006200-78006600 Enhancers A549 lung
50 chr1:78006200-78007000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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