The 2.0 version of rSNPBase

Variant report

Variant rs6603953
Chromosome Location chr1:78006631-78006632
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77983000-78009200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:77998000-78014000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr1:77999600-78009600 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr1:78000000-78011600 Weak transcription Primary T cells fromperipheralblood blood
5 chr1:78000000-78030600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:78000000-78031200 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr1:78000800-78006800 Strong transcription Primary T cells from cord blood blood
8 chr1:78004200-78007800 Strong transcription Primary T helper cells PMA-I stimulated --
9 chr1:78004400-78007600 Enhancers GM12878-XiMat blood
10 chr1:78004600-78008200 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:78004800-78007400 Enhancers Monocytes-CD14+_RO01746 blood
12 chr1:78004800-78010800 Strong transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:78005000-78007400 Strong transcription Breast Myoepithelial Primary Cells Breast
14 chr1:78005200-78007400 Enhancers Placenta Placenta
15 chr1:78005200-78008000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:78005400-78006800 Enhancers NHDF-Ad bronchial
17 chr1:78005400-78007000 Enhancers Muscle Satellite Cultured Cells --
18 chr1:78005400-78007000 Weak transcription Fetal Kidney kidney
19 chr1:78005400-78007600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:78005600-78007400 Enhancers Primary B cells from peripheral blood blood
21 chr1:78005600-78010200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:78005600-78010400 Weak transcription Fetal Heart heart
23 chr1:78005600-78014000 Weak transcription Right Ventricle heart
24 chr1:78005600-78034800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:78005800-78010800 Weak transcription Brain Angular Gyrus brain
26 chr1:78005800-78011000 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:78005800-78014000 Weak transcription Right Atrium heart
28 chr1:78005800-78026200 Weak transcription Left Ventricle heart
29 chr1:78005800-78032400 Weak transcription Psoas Muscle Psoas
30 chr1:78006000-78007800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:78006000-78010000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:78006000-78011400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:78006000-78013600 Weak transcription Brain Inferior Temporal Lobe brain
34 chr1:78006000-78014000 Weak transcription Brain Substantia Nigra brain
35 chr1:78006000-78022400 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr1:78006000-78026200 Weak transcription Fetal Muscle Leg muscle
37 chr1:78006000-78031000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr1:78006200-78007000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:78006200-78008200 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:78006200-78011400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:78006200-78024400 Weak transcription HSMMtube muscle
42 chr1:78006200-78027200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr1:78006200-78064400 Weak transcription Stomach Mucosa stomach
44 chr1:78006400-78006800 Weak transcription Brain Cingulate Gyrus brain
45 chr1:78006400-78006800 Active TSS Hela-S3 cervix
46 chr1:78006400-78006800 Weak transcription HSMM muscle
47 chr1:78006400-78009200 Weak transcription Brain Anterior Caudate brain
48 chr1:78006400-78010600 Weak transcription Brain Hippocampus Middle brain
49 chr1:78006400-78011200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr1:78006400-78011400 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015