The 2.0 version of rSNPBase

Variant report

Variant rs962388
Chromosome Location chr1:78029102-78029103
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78000000-78030600 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:78000000-78031200 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:78005600-78034800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:78005800-78032400 Weak transcription Psoas Muscle Psoas
5 chr1:78006000-78031000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:78006200-78064400 Weak transcription Stomach Mucosa stomach
7 chr1:78012000-78031000 Weak transcription Brain Angular Gyrus brain
8 chr1:78012600-78031000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:78014400-78030600 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr1:78014400-78031800 Weak transcription Right Ventricle heart
11 chr1:78016000-78030600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:78017800-78031000 Weak transcription HepG2 liver
13 chr1:78019600-78031200 Weak transcription Fetal Heart heart
14 chr1:78019800-78029200 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr1:78019800-78031200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr1:78019800-78031200 Weak transcription K562 blood
17 chr1:78021600-78030600 Weak transcription Adipose Nuclei Adipose
18 chr1:78022200-78030200 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:78022200-78030800 Weak transcription Hela-S3 cervix
20 chr1:78022400-78030600 Weak transcription Primary neutrophils fromperipheralblood blood
21 chr1:78022400-78032400 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr1:78022600-78034000 Strong transcription Primary T cells from cord blood blood
23 chr1:78022800-78030200 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr1:78022800-78031000 Weak transcription Spleen Spleen
25 chr1:78023000-78031000 Weak transcription Fetal Brain Female brain
26 chr1:78023200-78030800 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr1:78023200-78031000 Weak transcription Ovary ovary
28 chr1:78023200-78050200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:78023400-78030600 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr1:78023400-78031000 Weak transcription H9 Cell Line embryonic stem cell
31 chr1:78023400-78046200 Weak transcription Placenta Amnion Placenta Amnion
32 chr1:78023600-78029800 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr1:78023600-78035800 Strong transcription HSMM muscle
34 chr1:78023800-78030800 Weak transcription Brain Germinal Matrix brain
35 chr1:78023800-78048800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:78024400-78029400 Strong transcription Liver Liver
37 chr1:78024600-78030600 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:78024600-78048000 Strong transcription Primary T regulatory cells fromperipheralblood blood
39 chr1:78024800-78030600 Weak transcription Aorta Aorta
40 chr1:78024800-78030600 Weak transcription Brain Substantia Nigra brain
41 chr1:78024800-78031000 Weak transcription Brain Inferior Temporal Lobe brain
42 chr1:78024800-78038000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:78024800-78038000 Weak transcription Pancreas Pancrea
44 chr1:78024800-78048400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:78024800-78071000 Weak transcription Gastric stomach
46 chr1:78025000-78031000 Weak transcription Fetal Brain Male brain
47 chr1:78025000-78038000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr1:78025400-78031000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr1:78025400-78031000 Weak transcription NHLF lung
50 chr1:78025400-78050600 Strong transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015