Variant report

Variant	rs10881904
Chromosome Location	chr10:92974729-92974730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92969321..92971219-chr10:92974173..92975852,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509623	0.80[YRI][hapmap]
rs10881903	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881905	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186491	0.81[EUR][1000 genomes]
rs11186492	0.81[EUR][1000 genomes]
rs11186493	0.87[MEX][hapmap];0.81[EUR][1000 genomes]
rs11186501	1.00[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12220699	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12416166	0.81[EUR][1000 genomes]
rs12416484	0.80[EUR][1000 genomes]
rs12416527	0.81[EUR][1000 genomes]
rs12768855	0.87[MEX][hapmap]
rs12773770	0.82[MEX][hapmap];0.91[TSI][hapmap]
rs12778694	0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2420802	0.81[EUR][1000 genomes]
rs2421482	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3858285	0.86[JPT][hapmap];0.91[MEX][hapmap];0.85[ASN][1000 genomes]
rs7100396	0.87[MEX][hapmap];0.81[AMR][1000 genomes]
rs7902517	0.87[MEX][hapmap]
rs7906291	0.85[AMR][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92959200-92979200	Weak transcription	NHLF	lung
2	chr10:92959400-92979800	Weak transcription	Esophagus	oesophagus
3	chr10:92966600-92980000	Weak transcription	Ovary	ovary
4	chr10:92967200-92978800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:92968400-92979600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:92968600-92975200	Weak transcription	Small Intestine	intestine
7	chr10:92968600-92975400	Weak transcription	Fetal Intestine Large	intestine
8	chr10:92970400-92975800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:92970400-92979800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:92970400-92979800	Weak transcription	Psoas Muscle	Psoas
11	chr10:92970600-92975200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:92970600-92975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:92970600-92978800	Weak transcription	Dnd41	blood
14	chr10:92970600-92979200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:92970600-92979600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:92970600-92979800	Weak transcription	Thymus	Thymus
17	chr10:92970800-92975200	Weak transcription	HepG2	liver
18	chr10:92970800-92979600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:92971200-92975800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:92971200-92979000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:92971600-92975600	Weak transcription	Fetal Heart	heart
22	chr10:92971600-92979000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:92971800-92975000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:92971800-92975400	Weak transcription	Aorta	Aorta
25	chr10:92971800-92978800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:92971800-92979600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:92971800-92979800	Weak transcription	Left Ventricle	heart
28	chr10:92971800-92979800	Weak transcription	Right Atrium	heart
29	chr10:92971800-92979800	Weak transcription	Right Ventricle	heart
30	chr10:92972000-92979600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:92972200-92975200	Weak transcription	Brain Angular Gyrus	brain
32	chr10:92972200-92975200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:92972200-92979200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:92972200-92979600	Weak transcription	Brain Substantia Nigra	brain
35	chr10:92972600-92979200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:92973600-92976600	Enhancers	Primary B cells from peripheral blood	blood
37	chr10:92974200-92976600	Enhancers	Primary B cells from cord blood	blood
38	chr10:92974400-92974800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr10:92974400-92975200	Enhancers	GM12878-XiMat	blood
40	chr10:92974400-92975200	Weak transcription	K562	blood
41	chr10:92974400-92975600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr10:92974400-92976000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:92974600-92975000	Weak transcription	Brain Hippocampus Middle	brain

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