Variant report

Variant	rs12768855
Chromosome Location	chr10:92949003-92949004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92947556..92949360-chr10:92979346..92981559,2	K562	blood:

Variant related genes	Relation type
ENSG00000180628	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10437467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437468	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437469	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437470	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785995	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10881903	0.89[AMR][1000 genomes]
rs10881904	0.87[MEX][hapmap]
rs11186480	0.82[YRI][hapmap]
rs11186491	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186492	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186493	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186501	0.80[AMR][1000 genomes]
rs12220699	0.80[AMR][1000 genomes]
rs12244088	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12416166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772535	0.87[EUR][1000 genomes]
rs12773770	1.00[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs12778694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420802	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421482	0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs3858285	0.88[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs7100396	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902517	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902531	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902769	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906291	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7911631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92932200-92957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:92942200-92949400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:92944000-92951800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr10:92944600-92951200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:92945000-92951200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:92945200-92951000	Weak transcription	Ovary	ovary
7	chr10:92945400-92949800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:92945400-92951000	Weak transcription	Pancreas	Pancrea
9	chr10:92945400-92958000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:92945600-92949800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:92945600-92949800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:92945600-92949800	Weak transcription	Right Atrium	heart
13	chr10:92945600-92949800	Weak transcription	HSMM	muscle
14	chr10:92945600-92949800	Weak transcription	NHLF	lung
15	chr10:92945600-92950000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:92945600-92950200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:92945600-92950400	Weak transcription	HSMMtube	muscle
18	chr10:92945600-92952000	Weak transcription	Fetal Intestine Small	intestine
19	chr10:92945600-92958200	Weak transcription	Spleen	Spleen
20	chr10:92945800-92949600	Weak transcription	Osteobl	bone
21	chr10:92945800-92949800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:92945800-92949800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:92945800-92949800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:92945800-92949800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:92945800-92949800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:92945800-92949800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:92945800-92949800	Weak transcription	Left Ventricle	heart
28	chr10:92945800-92949800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:92945800-92950000	Weak transcription	NH-A	brain
30	chr10:92945800-92950200	Weak transcription	Fetal Heart	heart
31	chr10:92945800-92950200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr10:92945800-92952800	Weak transcription	Lung	lung
33	chr10:92945800-92953000	Weak transcription	Right Ventricle	heart
34	chr10:92946000-92949600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:92946200-92949800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:92946200-92949800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:92946200-92950000	Weak transcription	A549	lung
38	chr10:92946200-92950800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:92946200-92957800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:92946800-92949800	Weak transcription	Primary B cells from cord blood	blood
41	chr10:92947200-92949400	Weak transcription	Fetal Thymus	thymus
42	chr10:92947200-92952800	Weak transcription	Primary T cells from cord blood	blood
43	chr10:92947400-92959600	Weak transcription	Thymus	Thymus
44	chr10:92948400-92949200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:92948400-92950000	Genic enhancers	Dnd41	blood
46	chr10:92948400-92950200	Enhancers	Psoas Muscle	Psoas
47	chr10:92948400-92951400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr10:92948400-92951600	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr10:92948400-92951800	Enhancers	Primary B cells from peripheral blood	blood
50	chr10:92948400-92952000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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