Variant report

Variant	rs10437468
Chromosome Location	chr10:92945221-92945222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10437467	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10437469	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10437470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10785995	0.86[CEU][hapmap];0.83[CHB][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10881903	0.88[AMR][1000 genomes]
rs11186491	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186492	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186493	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186501	0.82[AMR][1000 genomes]
rs12220699	0.82[AMR][1000 genomes]
rs12244088	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12416166	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12416484	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12416527	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12768855	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12772535	0.87[EUR][1000 genomes]
rs12773770	1.00[CEU][hapmap]
rs12778694	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2420802	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421482	0.80[EUR][1000 genomes]
rs3858285	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs7100396	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7906291	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7911631	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92932200-92957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:92934800-92946400	Weak transcription	Primary T cells from cord blood	blood
3	chr10:92935400-92948400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:92940800-92947400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:92941600-92945400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:92942200-92949400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:92943800-92947400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:92943800-92948600	Weak transcription	Brain Angular Gyrus	brain
9	chr10:92944000-92947600	Enhancers	Dnd41	blood
10	chr10:92944000-92951800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:92944200-92945800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:92944400-92945800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:92944400-92945800	Enhancers	Left Ventricle	heart
14	chr10:92944400-92946800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:92944600-92945400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:92944600-92945600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:92944600-92945600	Strong transcription	Fetal Intestine Small	intestine
18	chr10:92944600-92945600	Enhancers	Right Atrium	heart
19	chr10:92944600-92945600	Enhancers	Spleen	Spleen
20	chr10:92944600-92945600	Enhancers	HSMM	muscle
21	chr10:92944600-92945800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:92944600-92945800	Enhancers	Lung	lung
23	chr10:92944600-92945800	Enhancers	Right Ventricle	heart
24	chr10:92944600-92945800	Enhancers	Stomach Smooth Muscle	stomach
25	chr10:92944600-92945800	Enhancers	NHDF-Ad	bronchial
26	chr10:92944600-92946000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:92944600-92946000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:92944600-92946200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:92944600-92946200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:92944600-92946200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:92944600-92946800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:92944600-92946800	Enhancers	Psoas Muscle	Psoas
33	chr10:92944600-92947200	Enhancers	Fetal Thymus	thymus
34	chr10:92944600-92947400	Enhancers	Thymus	Thymus
35	chr10:92944600-92951200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:92944800-92945400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:92944800-92945400	Enhancers	Brain Hippocampus Middle	brain
38	chr10:92944800-92945400	Weak transcription	HSMMtube	muscle
39	chr10:92944800-92945600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:92944800-92945600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr10:92944800-92945600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:92944800-92945600	Enhancers	Rectal Smooth Muscle	rectum
43	chr10:92944800-92945600	Enhancers	NHLF	lung
44	chr10:92944800-92945800	Enhancers	NH-A	brain
45	chr10:92944800-92946000	Enhancers	HepG2	liver
46	chr10:92944800-92946200	Enhancers	Primary T cells fromperipheralblood	blood
47	chr10:92945000-92945400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:92945000-92945400	Enhancers	Colon Smooth Muscle	Colon
49	chr10:92945000-92945400	Enhancers	Gastric	stomach
50	chr10:92945000-92945400	Flanking Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links