Variant report

Variant	rs12778694
Chromosome Location	chr10:92957222-92957223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10437467	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437468	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437469	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437470	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785995	0.81[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10881903	0.87[AMR][1000 genomes]
rs10881904	0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11186491	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186492	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186501	0.80[AMR][1000 genomes]
rs12220699	0.80[AMR][1000 genomes]
rs12244088	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12416166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772535	0.84[EUR][1000 genomes]
rs12773770	1.00[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs2420802	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421482	0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3858285	0.88[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs7100396	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902517	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902531	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902769	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906291	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7911631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92932200-92957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:92945400-92958000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:92945600-92958200	Weak transcription	Spleen	Spleen
4	chr10:92946200-92957800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:92947400-92959600	Weak transcription	Thymus	Thymus
6	chr10:92948400-92958000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:92949000-92958400	Weak transcription	Gastric	stomach
8	chr10:92950200-92958000	Weak transcription	Liver	Liver
9	chr10:92950200-92958400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:92950400-92958000	Weak transcription	Fetal Thymus	thymus
11	chr10:92950400-92960400	Weak transcription	A549	lung
12	chr10:92950600-92960800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:92950800-92958200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:92951400-92957800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:92951600-92958000	Weak transcription	Ovary	ovary
16	chr10:92951600-92958000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:92951600-92958200	Weak transcription	Esophagus	oesophagus
18	chr10:92951600-92958400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:92951600-92958400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:92951800-92958200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:92951800-92958200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:92952000-92957800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:92952200-92958200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:92952400-92961000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:92952600-92958200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:92953400-92958000	Weak transcription	Psoas Muscle	Psoas
27	chr10:92953400-92958200	Weak transcription	Lung	lung
28	chr10:92954200-92958000	Weak transcription	Primary T cells from cord blood	blood
29	chr10:92954400-92958000	Weak transcription	Primary B cells from cord blood	blood
30	chr10:92954800-92958000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:92954800-92958000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:92954800-92958000	Weak transcription	Right Ventricle	heart
33	chr10:92954800-92958200	Weak transcription	HSMM	muscle
34	chr10:92955000-92958000	Weak transcription	NHDF-Ad	bronchial
35	chr10:92955000-92958000	Weak transcription	NHLF	lung
36	chr10:92955000-92958200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:92955000-92958200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:92955000-92959800	Weak transcription	Aorta	Aorta
39	chr10:92955000-92967600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:92955200-92958000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:92955200-92958000	Weak transcription	Osteobl	bone
42	chr10:92955400-92960000	Enhancers	Left Ventricle	heart
43	chr10:92955600-92957400	Enhancers	Brain Hippocampus Middle	brain
44	chr10:92955600-92957600	Enhancers	Fetal Heart	heart
45	chr10:92955600-92958000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:92955600-92959400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:92955600-92961800	Enhancers	Right Atrium	heart
48	chr10:92955800-92958200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:92955800-92959400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:92956000-92957800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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