Variant report

Variant	rs11186493
Chromosome Location	chr10:92954356-92954357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92921621..92923292-chr10:92953508..92955971,2	K562	blood:
2	chr10:92950519..92953658-chr10:92954351..92956462,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10437467	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437468	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437469	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437470	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785995	0.81[CEU][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10881903	0.88[AMR][1000 genomes]
rs10881904	0.87[MEX][hapmap];0.81[EUR][1000 genomes]
rs10881905	0.80[EUR][1000 genomes]
rs11186491	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186492	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186501	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12220699	0.82[AMR][1000 genomes]
rs12244088	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12416166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768855	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772535	0.85[EUR][1000 genomes]
rs12773770	1.00[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs12778694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420802	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421482	0.87[MEX][hapmap];0.82[EUR][1000 genomes]
rs3858285	0.88[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7100396	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902517	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902531	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902769	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906291	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7911631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92932200-92957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:92945400-92958000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:92945600-92958200	Weak transcription	Spleen	Spleen
4	chr10:92946200-92957800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:92947400-92959600	Weak transcription	Thymus	Thymus
6	chr10:92948400-92958000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:92949000-92958400	Weak transcription	Gastric	stomach
8	chr10:92950200-92958000	Weak transcription	Liver	Liver
9	chr10:92950200-92958400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:92950400-92958000	Weak transcription	Fetal Thymus	thymus
11	chr10:92950400-92960400	Weak transcription	A549	lung
12	chr10:92950600-92960800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:92950800-92958200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:92951400-92957800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:92951600-92954400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:92951600-92954400	Weak transcription	NHLF	lung
17	chr10:92951600-92954600	Weak transcription	HSMM	muscle
18	chr10:92951600-92955600	Weak transcription	Right Atrium	heart
19	chr10:92951600-92956800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:92951600-92957000	Weak transcription	Small Intestine	intestine
21	chr10:92951600-92957000	Weak transcription	NH-A	brain
22	chr10:92951600-92958000	Weak transcription	Ovary	ovary
23	chr10:92951600-92958000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:92951600-92958200	Weak transcription	Esophagus	oesophagus
25	chr10:92951600-92958400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:92951600-92958400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:92951800-92955600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:92951800-92955800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:92951800-92957200	Weak transcription	Adipose Nuclei	Adipose
30	chr10:92951800-92958200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:92951800-92958200	Weak transcription	Brain Angular Gyrus	brain
32	chr10:92952000-92954400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:92952000-92957800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:92952200-92954400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:92952200-92954400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:92952200-92955000	Enhancers	Dnd41	blood
37	chr10:92952200-92958200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:92952400-92955600	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:92952400-92961000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:92952600-92954400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:92952600-92958200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:92952800-92954400	ZNF genes & repeats	GM12878-XiMat	blood
43	chr10:92952800-92954800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr10:92952800-92956600	Weak transcription	Brain Substantia Nigra	brain
45	chr10:92953000-92955600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:92953000-92955800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr10:92953000-92956400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:92953200-92954800	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr10:92953400-92958000	Weak transcription	Psoas Muscle	Psoas
50	chr10:92953400-92958200	Weak transcription	Lung	lung

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