Variant report

Variant	rs7100396
Chromosome Location	chr10:92947116-92947117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10437467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437468	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437469	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10437470	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10785995	0.81[CEU][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10881898	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs10881903	0.87[AMR][1000 genomes]
rs10881904	0.87[MEX][hapmap];0.81[AMR][1000 genomes]
rs11186491	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186492	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186493	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186501	0.80[AMR][1000 genomes]
rs12220699	0.80[AMR][1000 genomes]
rs12244088	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12416166	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416484	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416527	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12768855	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12772535	0.87[EUR][1000 genomes]
rs12773770	1.00[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs12778694	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2420802	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421482	0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3858285	0.88[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs7902517	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902531	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902769	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906291	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7911631	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92932200-92957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:92935400-92948400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:92940800-92947400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:92942200-92949400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:92943800-92947400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:92943800-92948600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:92944000-92947600	Enhancers	Dnd41	blood
8	chr10:92944000-92951800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:92944600-92947200	Enhancers	Fetal Thymus	thymus
10	chr10:92944600-92947400	Enhancers	Thymus	Thymus
11	chr10:92944600-92951200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:92945000-92947400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:92945000-92951200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:92945200-92948400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:92945200-92948400	Weak transcription	Esophagus	oesophagus
16	chr10:92945200-92951000	Weak transcription	Ovary	ovary
17	chr10:92945400-92947200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:92945400-92948400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:92945400-92948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:92945400-92948600	Weak transcription	Gastric	stomach
21	chr10:92945400-92948800	Weak transcription	Brain Anterior Caudate	brain
22	chr10:92945400-92949800	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:92945400-92951000	Weak transcription	Pancreas	Pancrea
24	chr10:92945400-92958000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:92945600-92948600	Weak transcription	Aorta	Aorta
26	chr10:92945600-92949800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:92945600-92949800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:92945600-92949800	Weak transcription	Right Atrium	heart
29	chr10:92945600-92949800	Weak transcription	HSMM	muscle
30	chr10:92945600-92949800	Weak transcription	NHLF	lung
31	chr10:92945600-92950000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:92945600-92950200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:92945600-92950400	Weak transcription	HSMMtube	muscle
34	chr10:92945600-92952000	Weak transcription	Fetal Intestine Small	intestine
35	chr10:92945600-92958200	Weak transcription	Spleen	Spleen
36	chr10:92945800-92948400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:92945800-92948600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:92945800-92949000	Weak transcription	NHDF-Ad	bronchial
39	chr10:92945800-92949600	Weak transcription	Osteobl	bone
40	chr10:92945800-92949800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:92945800-92949800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:92945800-92949800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:92945800-92949800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:92945800-92949800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:92945800-92949800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:92945800-92949800	Weak transcription	Left Ventricle	heart
47	chr10:92945800-92949800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:92945800-92950000	Weak transcription	NH-A	brain
49	chr10:92945800-92950200	Weak transcription	Fetal Heart	heart
50	chr10:92945800-92950200	Weak transcription	Stomach Smooth Muscle	stomach

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