Variant report

Variant	rs12416527
Chromosome Location	chr10:92953952-92953953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92921621..92923292-chr10:92953508..92955971,2	K562	blood:
2	chr10:92951727..92954168-chr10:92957845..92960069,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10437467	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437468	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437469	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10437470	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785995	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10881903	0.88[AMR][1000 genomes]
rs10881904	0.81[EUR][1000 genomes]
rs10881905	0.80[EUR][1000 genomes]
rs11186491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186492	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186501	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12220699	0.81[AMR][1000 genomes]
rs12244088	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12416166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772535	0.85[EUR][1000 genomes]
rs12773770	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12778694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421482	0.82[EUR][1000 genomes]
rs3858285	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs7100396	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902517	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902531	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902769	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906291	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7911631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92932200-92957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:92945400-92958000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:92945600-92958200	Weak transcription	Spleen	Spleen
4	chr10:92946200-92957800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:92947400-92959600	Weak transcription	Thymus	Thymus
6	chr10:92948400-92958000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:92949000-92958400	Weak transcription	Gastric	stomach
8	chr10:92949800-92954000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr10:92950200-92958000	Weak transcription	Liver	Liver
10	chr10:92950200-92958400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:92950400-92958000	Weak transcription	Fetal Thymus	thymus
12	chr10:92950400-92960400	Weak transcription	A549	lung
13	chr10:92950600-92960800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:92950800-92958200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:92951400-92957800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:92951600-92954000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr10:92951600-92954000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:92951600-92954200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:92951600-92954400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:92951600-92954400	Weak transcription	NHLF	lung
21	chr10:92951600-92954600	Weak transcription	HSMM	muscle
22	chr10:92951600-92955600	Weak transcription	Right Atrium	heart
23	chr10:92951600-92956800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:92951600-92957000	Weak transcription	Small Intestine	intestine
25	chr10:92951600-92957000	Weak transcription	NH-A	brain
26	chr10:92951600-92958000	Weak transcription	Ovary	ovary
27	chr10:92951600-92958000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:92951600-92958200	Weak transcription	Esophagus	oesophagus
29	chr10:92951600-92958400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:92951600-92958400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:92951800-92954200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:92951800-92955600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:92951800-92955800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr10:92951800-92957200	Weak transcription	Adipose Nuclei	Adipose
35	chr10:92951800-92958200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:92951800-92958200	Weak transcription	Brain Angular Gyrus	brain
37	chr10:92952000-92954400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:92952000-92957800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:92952200-92954400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:92952200-92954400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:92952200-92955000	Enhancers	Dnd41	blood
42	chr10:92952200-92958200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:92952400-92955600	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:92952400-92961000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:92952600-92954400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:92952600-92958200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:92952800-92954200	Strong transcription	Primary T cells from cord blood	blood
48	chr10:92952800-92954400	ZNF genes & repeats	GM12878-XiMat	blood
49	chr10:92952800-92954800	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr10:92952800-92956600	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links