Variant report

Variant	rs10881968
Chromosome Location	chr10:93550624-93550625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736064	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10748568	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10748569	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10786011	0.92[EUR][1000 genomes]
rs10786013	0.93[EUR][1000 genomes]
rs10786015	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10786018	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10881959	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11186695	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11814405	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12248932	0.87[EUR][1000 genomes]
rs1340420	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1572933	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1572934	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1770467	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1770470	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1770472	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1770475	0.83[EUR][1000 genomes]
rs1772180	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1772185	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1935030	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1935031	0.88[EUR][1000 genomes]
rs2066276	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2259280	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2487513	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2487514	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2994394	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3930831	0.90[EUR][1000 genomes]
rs4403720	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4933220	0.89[ASN][1000 genomes]
rs6583787	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7073486	0.88[EUR][1000 genomes]
rs7077236	0.90[EUR][1000 genomes]
rs7085519	0.87[EUR][1000 genomes]
rs7897784	0.93[EUR][1000 genomes]
rs7911346	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7918126	0.90[EUR][1000 genomes]
rs946896	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs10881968	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10881968	TNKS2-AS1	cis	Artery Aorta	GTEx
rs10881968	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs10881968	TNKS2-AS1	cis	lung	GTEx
rs10881968	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs10881968	TNKS2-AS1	cis	Stomach	GTEx
rs10881968	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs10881968	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs10881968	TNKS2-AS1	cis	Nerve Tibial	GTEx
rs10881968	TNKS2-AS1	cis	Artery Tibial	GTEx
rs10881968	TNKS2-AS1	cis	Thyroid	GTEx
rs10881968	TNKS2-AS1	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93541000-93555800	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93547600-93554600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:93548600-93554800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:93548600-93556400	Weak transcription	H9 Cell Line	embryonic stem cell

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