Variant report

Variant	rs3930831
Chromosome Location	chr10:93466368-93466369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93460617..93462376-chr10:93465718..93467572,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736064	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10748564	0.82[EUR][1000 genomes]
rs10748568	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10748569	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786011	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786013	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786015	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786018	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881959	0.96[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881968	0.90[EUR][1000 genomes]
rs11186695	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11814405	0.85[EUR][1000 genomes]
rs12248932	0.84[CEU][hapmap]
rs1340420	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1539041	0.81[ASN][1000 genomes]
rs1572933	0.85[EUR][1000 genomes]
rs1572934	0.85[EUR][1000 genomes]
rs1770467	0.85[EUR][1000 genomes]
rs1770470	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs1770472	0.84[EUR][1000 genomes]
rs1772180	0.85[EUR][1000 genomes]
rs1772185	0.85[EUR][1000 genomes]
rs1935030	0.93[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1935031	0.81[EUR][1000 genomes]
rs2066276	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2259280	0.82[EUR][1000 genomes]
rs2487513	0.85[EUR][1000 genomes]
rs2487514	0.81[EUR][1000 genomes]
rs2994394	0.84[EUR][1000 genomes]
rs4403720	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583787	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7073486	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085519	0.85[CEU][hapmap]
rs7897784	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911346	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7918126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946896	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs3930831	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs3930831	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs3930831	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs3930831	TNKS2-AS1	cis	Stomach	GTEx
rs3930831	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs3930831	TNKS2-AS1	cis	Artery Tibial	GTEx
rs3930831	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs3930831	TNKS2-AS1	cis	lung	GTEx
rs3930831	TNKS2-AS1	cis	Thyroid	GTEx
rs3930831	TNKS2-AS1	cis	Nerve Tibial	GTEx
rs3930831	TNKS2-AS1	cis	Artery Aorta	GTEx
rs3930831	TNKS2-AS1	cis	Muscle Skeletal	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93461600-93467200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:93461600-93467200	Weak transcription	Hela-S3	cervix
3	chr10:93461600-93468000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:93462800-93467600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:93464800-93471600	Enhancers	Liver	Liver
6	chr10:93465800-93467400	Enhancers	HepG2	liver
7	chr10:93466000-93469800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:93466200-93466400	Enhancers	K562	blood

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