Variant report

Variant	rs1935030
Chromosome Location	chr10:93572418-93572419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93558698..93560238-chr10:93571745..93574194,2	MCF-7	breast:
2	chr10:93567409..93570615-chr10:93572216..93575127,3	MCF-7	breast:
3	chr10:93565439..93568069-chr10:93570903..93572534,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180581	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10736064	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10748568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748569	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786011	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786013	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786015	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881934	1.00[JPT][hapmap]
rs10881959	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881968	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11186695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186726	0.80[AMR][1000 genomes]
rs11186731	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11814405	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12248932	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12573311	0.84[ASN][1000 genomes]
rs1340420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1539041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1572933	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1572934	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1770467	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1770470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1770472	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1770475	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1772180	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1772185	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1935031	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2066276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2259280	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2487513	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2487514	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2994394	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3930831	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4403720	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583787	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7073486	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7077236	0.89[EUR][1000 genomes]
rs7085519	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7897784	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7911346	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918126	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs946896	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs1935030	TNKS2-AS1	cis	Nerve Tibial	GTEx
rs1935030	TNKS2-AS1	cis	Stomach	GTEx
rs1935030	PPP1R3C	cis	Esophagus Mucosa	GTEx
rs1935030	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs1935030	TNKS2-AS1	cis	Artery Tibial	GTEx
rs1935030	TNKS2-AS1	cis	Artery Aorta	GTEx
rs1935030	TNKS2-AS1	cis	Thyroid	GTEx
rs1935030	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs1935030	TNKS2-AS1	cis	lung	GTEx
rs1935030	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs1935030	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs1935030	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs1935030	TNKS2-AS1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559400-93572800	Weak transcription	Lung	lung
3	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
4	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:93560200-93572800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:93560200-93572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
9	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:93560400-93572600	Weak transcription	NH-A	brain
11	chr10:93560400-93572800	Weak transcription	A549	lung
12	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
13	chr10:93560400-93574400	Weak transcription	NHLF	lung
14	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:93560800-93573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:93561000-93572800	Weak transcription	Fetal Kidney	kidney
17	chr10:93561600-93572800	Weak transcription	Fetal Brain Male	brain
18	chr10:93562600-93572800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
20	chr10:93563600-93572800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
22	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
23	chr10:93564000-93573200	Weak transcription	Brain Germinal Matrix	brain
24	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:93564800-93572800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:93565400-93572600	Weak transcription	NHDF-Ad	bronchial
28	chr10:93565400-93574200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:93565600-93572600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:93565600-93572600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:93565600-93572800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:93565800-93572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:93565800-93572600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:93565800-93572600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:93565800-93572600	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:93565800-93572600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:93565800-93572600	Weak transcription	GM12878-XiMat	blood
38	chr10:93565800-93572800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:93565800-93572800	Weak transcription	Fetal Brain Female	brain
40	chr10:93565800-93572800	Weak transcription	Fetal Intestine Large	intestine
41	chr10:93565800-93572800	Weak transcription	HMEC	breast
42	chr10:93565800-93573200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:93565800-93573200	Weak transcription	Brain Anterior Caudate	brain
44	chr10:93565800-93574400	Weak transcription	Brain Substantia Nigra	brain
45	chr10:93565800-93577800	Weak transcription	Right Ventricle	heart
46	chr10:93565800-93578200	Weak transcription	Gastric	stomach
47	chr10:93565800-93578400	Weak transcription	Brain Angular Gyrus	brain
48	chr10:93565800-93579800	Weak transcription	Small Intestine	intestine
49	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:93567600-93579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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