Variant report

Variant	rs10736064
Chromosome Location	chr10:93509475-93509476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93507039..93510554-chr10:93666843..93669404,3	MCF-7	breast:
2	chr10:93503756..93506053-chr10:93508212..93510590,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10748568	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10748569	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786011	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10786013	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10786015	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786018	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881959	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881968	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11186695	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11814405	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12248932	0.83[EUR][1000 genomes]
rs1340420	0.88[EUR][1000 genomes]
rs1539041	0.85[ASN][1000 genomes]
rs1572933	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1572934	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1770467	0.89[EUR][1000 genomes]
rs1770470	0.88[EUR][1000 genomes]
rs1770472	0.88[EUR][1000 genomes]
rs1772180	0.89[EUR][1000 genomes]
rs1772185	0.89[EUR][1000 genomes]
rs1935030	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1935031	0.84[EUR][1000 genomes]
rs2066276	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2259280	0.85[EUR][1000 genomes]
rs2487513	0.89[EUR][1000 genomes]
rs2487514	0.84[EUR][1000 genomes]
rs2994394	0.88[EUR][1000 genomes]
rs3930831	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4403720	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6583787	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7073486	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7077236	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7085519	0.83[EUR][1000 genomes]
rs7897784	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911346	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7918126	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs946896	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975785	chr10:93501141-93525212	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs10736064	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs10736064	TNKS2-AS1	cis	Thyroid	GTEx
rs10736064	TNKS2-AS1	cis	Artery Tibial	GTEx
rs10736064	TNKS2-AS1	cis	Nerve Tibial	GTEx
rs10736064	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs10736064	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs10736064	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10736064	TNKS2-AS1	cis	Artery Aorta	GTEx
rs10736064	TNKS2-AS1	cis	lung	GTEx
rs10736064	TNKS2-AS1	cis	Stomach	GTEx
rs10736064	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs10736064	TNKS2-AS1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93509000-93509800	Active TSS	A549	lung
2	chr10:93509200-93509800	Active TSS	Hela-S3	cervix
3	chr10:93509200-93509800	Active TSS	HepG2	liver
4	chr10:93509400-93509800	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:93509400-93509800	Active TSS	Placenta	Placenta

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