Variant report

Variant	rs6583787
Chromosome Location	chr10:93541588-93541589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93536771..93542984-chr10:93556419..93559593,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107854	Chromatin interaction
ENSG00000228701	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10736064	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748568	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10748569	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786011	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786013	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786015	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786018	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881934	1.00[JPT][hapmap]
rs10881959	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881968	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11186695	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186731	0.81[ASN][1000 genomes]
rs11814405	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12248932	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1340420	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1539041	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1572933	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572934	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1770467	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1770470	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1770472	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1770475	0.81[EUR][1000 genomes]
rs1772180	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1772185	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1935030	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935031	0.87[EUR][1000 genomes]
rs2066276	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2259280	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2487513	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2487514	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2994394	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3930831	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4403720	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66627345	0.81[ASN][1000 genomes]
rs7073486	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7077236	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7085519	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7897784	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7911346	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7918126	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs946896	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs6583787	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs6583787	TTC7A	trans	parietal	SCAN
rs6583787	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs6583787	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs6583787	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs6583787	TNKS2-AS1	cis	Nerve Tibial	GTEx
rs6583787	TNKS2-AS1	cis	Artery Tibial	GTEx
rs6583787	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs6583787	TNKS2-AS1	cis	Thyroid	GTEx
rs6583787	TNKS2-AS1	cis	lung	GTEx
rs6583787	TNKS2-AS1	cis	Stomach	GTEx
rs6583787	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs6583787	TNKS2-AS1	cis	Artery Aorta	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93538800-93541800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:93538800-93542200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93539000-93542600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:93539200-93542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:93539200-93542200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:93539200-93542200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:93539400-93542600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:93539800-93547000	Weak transcription	Esophagus	oesophagus
9	chr10:93541000-93555800	Weak transcription	Primary B cells from cord blood	blood

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