Variant report

Variant	rs7073486
Chromosome Location	chr10:93452141-93452142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93444797..93447256-chr10:93449806..93452574,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10736064	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10748564	0.84[EUR][1000 genomes]
rs10748568	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10748569	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786011	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786013	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786015	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786018	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881934	1.00[JPT][hapmap]
rs10881959	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881968	0.88[EUR][1000 genomes]
rs11186695	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11814405	0.84[EUR][1000 genomes]
rs12248932	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs1340420	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs1539041	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1572933	0.84[EUR][1000 genomes]
rs1572934	0.84[EUR][1000 genomes]
rs1770467	0.84[EUR][1000 genomes]
rs1770470	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1770472	0.83[EUR][1000 genomes]
rs1772180	0.84[EUR][1000 genomes]
rs1772185	0.84[EUR][1000 genomes]
rs1935030	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2066276	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2259280	0.81[EUR][1000 genomes]
rs2487513	0.84[EUR][1000 genomes]
rs2994394	0.83[EUR][1000 genomes]
rs3930831	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403720	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583787	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7077236	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7085519	0.88[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs7897784	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911346	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7918126	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946896	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs7073486	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs7073486	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs7073486	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs7073486	TTC7A	trans	parietal	SCAN
rs7073486	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs7073486	TNKS2-AS1	cis	Stomach	GTEx
rs7073486	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs7073486	TNKS2-AS1	cis	Artery Tibial	GTEx
rs7073486	TNKS2-AS1	cis	Nerve Tibial	GTEx
rs7073486	TNKS2-AS1	cis	Thyroid	GTEx
rs7073486	TNKS2-AS1	cis	Artery Aorta	GTEx
rs7073486	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs7073486	TNKS2-AS1	cis	lung	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93449400-93452200	Enhancers	HMEC	breast
2	chr10:93449400-93453000	Enhancers	NHEK	skin
3	chr10:93450200-93453000	Enhancers	Liver	Liver
4	chr10:93450200-93453600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:93450200-93454000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:93450400-93452400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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