Variant report

Variant	rs4403720
Chromosome Location	chr10:93521551-93521552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10736064	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10748568	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10748569	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786011	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786013	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786015	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786018	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881959	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881968	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11186695	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11814405	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12248932	0.83[EUR][1000 genomes]
rs1340420	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1539041	0.91[ASN][1000 genomes]
rs1572933	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1572934	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1770467	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1770470	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1770472	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1772180	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1772185	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1935030	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1935031	0.84[EUR][1000 genomes]
rs2066276	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2259280	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2487513	0.89[EUR][1000 genomes]
rs2487514	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2994394	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3930831	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583787	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7073486	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7077236	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7085519	0.83[EUR][1000 genomes]
rs7897784	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7911346	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7918126	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs946896	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975785	chr10:93501141-93525212	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs4403720	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs4403720	TNKS2-AS1	cis	Nerve Tibial	GTEx
rs4403720	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs4403720	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs4403720	TNKS2-AS1	cis	Thyroid	GTEx
rs4403720	TNKS2-AS1	cis	lung	GTEx
rs4403720	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs4403720	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs4403720	TNKS2-AS1	cis	Artery Aorta	GTEx
rs4403720	TNKS2-AS1	cis	Stomach	GTEx
rs4403720	TNKS2-AS1	cis	Artery Tibial	GTEx
rs4403720	TNKS2-AS1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93521200-93521800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:93521400-93522000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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