The 2.0 version of rSNPBase

Variant report

Variant rs10889207
Chromosome Location chr1:61581364-61581365
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61558600-61586000 Weak transcription Fetal Intestine Small intestine
2 chr1:61559000-61582000 Weak transcription Hela-S3 cervix
3 chr1:61563600-61586000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:61563800-61585600 Weak transcription NHEK skin
5 chr1:61563800-61585800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:61564400-61587400 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:61567600-61582000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:61575000-61586200 Weak transcription Fetal Intestine Large intestine
9 chr1:61576000-61582000 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr1:61576800-61581800 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:61577200-61581600 Weak transcription Fetal Lung lung
12 chr1:61577400-61581600 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:61577400-61582000 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:61577400-61582000 Weak transcription Fetal Brain Female brain
15 chr1:61577400-61584800 Weak transcription Fetal Kidney kidney
16 chr1:61577800-61581800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:61578200-61581800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:61578200-61582000 Weak transcription Brain Cingulate Gyrus brain
19 chr1:61578200-61582200 Weak transcription Brain Germinal Matrix brain
20 chr1:61578400-61581800 Weak transcription Fetal Brain Male brain
21 chr1:61578400-61582000 Weak transcription Brain Angular Gyrus brain
22 chr1:61578600-61581400 Weak transcription Brain Substantia Nigra brain
23 chr1:61578600-61582000 Weak transcription HSMMtube muscle
24 chr1:61579200-61586000 Enhancers Liver Liver
25 chr1:61579400-61581600 Genic enhancers Pancreas Pancrea
26 chr1:61580000-61581800 Enhancers A549 lung
27 chr1:61580400-61581400 Enhancers Monocytes-CD14+_RO01746 blood
28 chr1:61580400-61582800 Enhancers Fetal Heart heart
29 chr1:61580600-61581400 Enhancers Primary monocytes fromperipheralblood blood
30 chr1:61580600-61581400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:61580600-61581600 Enhancers Aorta Aorta
32 chr1:61580600-61582600 Enhancers Duodenum Mucosa Duodenum
33 chr1:61580800-61581400 Genic enhancers Fetal Muscle Leg muscle
34 chr1:61580800-61581400 Enhancers Lung lung
35 chr1:61580800-61582200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:61580800-61582400 Enhancers Left Ventricle heart
37 chr1:61580800-61582400 Enhancers Right Atrium heart
38 chr1:61581000-61581400 Enhancers Primary hematopoietic stem cells blood
39 chr1:61581000-61581400 Enhancers Primary hematopoietic stem cells short term culture blood
40 chr1:61581000-61581400 Enhancers Brain Anterior Caudate brain
41 chr1:61581000-61581400 Enhancers Gastric stomach
42 chr1:61581000-61581400 Genic enhancers HepG2 liver
43 chr1:61581000-61581600 Enhancers Right Ventricle heart
44 chr1:61581000-61581600 Transcr. at gene 5' and 3' K562 blood
45 chr1:61581000-61582200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:61581000-61582400 Enhancers Psoas Muscle Psoas
47 chr1:61581000-61582600 Enhancers Skeletal Muscle Male skeletal muscle
48 chr1:61581000-61582800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
49 chr1:61581000-61582800 Enhancers Colon Smooth Muscle Colon
50 chr1:61581000-61582800 Enhancers Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015