Variant report

Variant	rs12409737
Chromosome Location	chr1:61571962-61571963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61565382..61568002-chr1:61570318..61572303,2	K562	blood:
2	chr1:61558952..61561705-chr1:61569096..61571977,3	K562	blood:
3	chr1:61514011..61517116-chr1:61571465..61573552,3	K562	blood:
4	chr1:61519268..61523270-chr1:61570391..61572447,3	K562	blood:
5	chr1:61546229..61553202-chr1:61567332..61574812,14	K562	blood:
6	chr1:61560205..61563000-chr1:61570477..61572307,2	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction
ENSG00000263380	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207694	0.85[EUR][1000 genomes]
rs11207695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207702	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12021605	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12033718	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12126498	1.00[CEU][hapmap]
rs12126737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12404093	0.83[YRI][hapmap]
rs1412712	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17121702	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17121705	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1832184	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1930314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620575	0.83[EUR][1000 genomes]
rs4915729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4915730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4915731	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs964091	0.83[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
2	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:61558600-61581200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:61558600-61586000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:61559000-61582000	Weak transcription	Hela-S3	cervix
6	chr1:61560400-61575800	Weak transcription	Fetal Stomach	stomach
7	chr1:61561400-61576200	Weak transcription	HUVEC	blood vessel
8	chr1:61563600-61586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:61563800-61585600	Weak transcription	NHEK	skin
10	chr1:61563800-61585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:61564400-61587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:61565200-61574200	Weak transcription	HepG2	liver
13	chr1:61566000-61576000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:61567000-61579000	Weak transcription	Left Ventricle	heart
15	chr1:61567600-61581200	Weak transcription	Ovary	ovary
16	chr1:61567600-61582000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:61568000-61580000	Weak transcription	A549	lung
18	chr1:61568400-61572200	Enhancers	Liver	Liver
19	chr1:61569000-61573400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:61569200-61573200	Weak transcription	Fetal Lung	lung
21	chr1:61569200-61573400	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:61569200-61574800	Weak transcription	Adipose Nuclei	Adipose
23	chr1:61569200-61581000	Weak transcription	Stomach Mucosa	stomach
24	chr1:61569400-61576200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:61569800-61572200	Enhancers	K562	blood
26	chr1:61569800-61576200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:61569800-61576200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:61570000-61575800	Weak transcription	Aorta	Aorta
29	chr1:61570200-61575800	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:61570400-61572800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:61570600-61574200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:61570800-61572200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:61570800-61575600	Weak transcription	Fetal Heart	heart
34	chr1:61570800-61575800	Weak transcription	Fetal Brain Male	brain
35	chr1:61570800-61575800	Weak transcription	Small Intestine	intestine
36	chr1:61571600-61575800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr1:61571800-61572800	Weak transcription	Brain Substantia Nigra	brain
38	chr1:61571800-61575600	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links