The 2.0 version of rSNPBase

Variant report

Variant rs12126498
Chromosome Location chr1:61605033-61605034
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61587000-61606800 Weak transcription Fetal Intestine Large intestine
2 chr1:61598600-61605200 Weak transcription Right Ventricle heart
3 chr1:61598800-61605200 Weak transcription Rectal Smooth Muscle rectum
4 chr1:61598800-61605600 Weak transcription Fetal Intestine Small intestine
5 chr1:61599000-61606200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:61599400-61605800 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:61599600-61605800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:61600000-61617200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr1:61603800-61607000 Enhancers Left Ventricle heart
10 chr1:61603800-61607200 Enhancers Psoas Muscle Psoas
11 chr1:61603800-61607400 Enhancers Aorta Aorta
12 chr1:61603800-61608400 Enhancers Cortex derived primary cultured neurospheres brain
13 chr1:61604000-61608400 Weak transcription Lung lung
14 chr1:61604200-61605600 Weak transcription Esophagus oesophagus
15 chr1:61604400-61606800 Enhancers Brain Hippocampus Middle brain
16 chr1:61604400-61609200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:61604600-61605200 Enhancers Fetal Muscle Trunk muscle
18 chr1:61604600-61606400 Enhancers Placenta Placenta
19 chr1:61604600-61607800 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr1:61604600-61607800 Enhancers Fetal Muscle Leg muscle
21 chr1:61604600-61608800 Enhancers Brain Anterior Caudate brain
22 chr1:61604600-61609000 Enhancers Liver Liver
23 chr1:61604600-61610400 Enhancers Brain Substantia Nigra brain
24 chr1:61604800-61605200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:61604800-61605200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:61604800-61605200 Weak transcription Fetal Stomach stomach
27 chr1:61604800-61605200 Flanking Active TSS Hela-S3 cervix
28 chr1:61604800-61605200 Flanking Active TSS NHEK skin
29 chr1:61604800-61605400 Flanking Active TSS Skeletal Muscle Male skeletal muscle
30 chr1:61604800-61605400 Flanking Active TSS A549 lung
31 chr1:61604800-61605600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
32 chr1:61604800-61605800 Flanking Active TSS Muscle Satellite Cultured Cells --
33 chr1:61604800-61606200 Enhancers ES-WA7 Cell Line embryonic stem cell
34 chr1:61604800-61606600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:61604800-61606800 Enhancers Osteobl bone
36 chr1:61604800-61607400 Enhancers Fetal Brain Male brain
37 chr1:61604800-61607600 Enhancers Primary monocytes fromperipheralblood blood
38 chr1:61604800-61607600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:61604800-61607600 Enhancers Ovary ovary
40 chr1:61604800-61607600 Enhancers Monocytes-CD14+_RO01746 blood
41 chr1:61604800-61607800 Enhancers HUES64 Cell Line embryonic stem cell
42 chr1:61604800-61607800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
43 chr1:61604800-61608000 Enhancers Fetal Heart heart
44 chr1:61604800-61608600 Enhancers Adipose Nuclei Adipose
45 chr1:61604800-61608600 Enhancers HepG2 liver
46 chr1:61604800-61608800 Enhancers Fetal Adrenal Gland Adrenal Gland
47 chr1:61604800-61609400 Enhancers Brain Cingulate Gyrus brain
48 chr1:61604800-61610000 Enhancers Colon Smooth Muscle Colon
49 chr1:61604800-61610200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:61605000-61605200 Enhancers Brain Angular Gyrus brain

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Last update: Aug 31, 2015