Variant report

Variant	rs17376392
Chromosome Location	chr1:61483830-61483831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12126498	1.00[CHB][hapmap]
rs12403525	1.00[CHB][hapmap]
rs1573249	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1625926	0.83[EUR][1000 genomes]
rs17121533	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4915584	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4915585	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4915725	1.00[CEU][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4915726	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs904271	1.00[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs924274	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17376392	PRAC	trans	lymphoblastoid	seeQTL
rs17376392	KCTD14	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61480200-61491400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:61482000-61489800	Weak transcription	K562	blood
3	chr1:61483600-61484200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:61483800-61484000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:61483800-61484400	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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