Variant report

Variant	rs10789092
Chromosome Location	chr1:61599122-61599123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61588911..61591027-chr1:61598521..61600054,2	K562	blood:
2	chr1:61592937..61594569-chr1:61597659..61600079,2	K562	blood:
3	chr1:61598222..61600902-chr1:61603956..61606855,3	K562	blood:
4	chr1:61584347..61588308-chr1:61598128..61600644,3	K562	blood:
5	chr1:61594082..61599148-chr1:61599655..61602898,9	K562	blood:

Variant related genes	Relation type
ENSG00000270742	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10889207	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207692	0.86[CHD][hapmap];0.84[TSI][hapmap]
rs11207694	0.83[EUR][1000 genomes]
rs11207695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207702	0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs12021605	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12033718	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12126498	1.00[CEU][hapmap]
rs12126737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12130085	0.86[CHD][hapmap];0.84[TSI][hapmap]
rs12142294	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12403502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12409737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1412712	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17121702	0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs17121705	0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1832184	0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1930314	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4620575	1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs4915729	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915731	0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs964091	1.00[TSI][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61581400-61604600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61582400-61604800	Weak transcription	Hela-S3	cervix
3	chr1:61587000-61606800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:61591800-61604600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:61594200-61603800	Weak transcription	Left Ventricle	heart
6	chr1:61595400-61600200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:61595800-61599400	Enhancers	Fetal Brain Female	brain
8	chr1:61596200-61599400	Enhancers	Fetal Lung	lung
9	chr1:61597000-61599600	Enhancers	Brain Substantia Nigra	brain
10	chr1:61597000-61599600	Enhancers	Fetal Stomach	stomach
11	chr1:61597000-61600000	Enhancers	HepG2	liver
12	chr1:61597800-61599200	Enhancers	Fetal Kidney	kidney
13	chr1:61597800-61600000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:61598000-61604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:61598200-61599200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:61598200-61599200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:61598200-61599200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:61598200-61599400	Active TSS	Aorta	Aorta
19	chr1:61598200-61601000	Weak transcription	Psoas Muscle	Psoas
20	chr1:61598200-61604000	Weak transcription	NHEK	skin
21	chr1:61598200-61604800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:61598400-61599200	Active TSS	A549	lung
23	chr1:61598400-61599400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:61598400-61604600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:61598400-61604800	Weak transcription	Adipose Nuclei	Adipose
26	chr1:61598600-61600200	Enhancers	Colon Smooth Muscle	Colon
27	chr1:61598600-61601200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:61598600-61604800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:61598600-61604800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr1:61598600-61604800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr1:61598600-61605000	Weak transcription	Brain Angular Gyrus	brain
32	chr1:61598600-61605000	Weak transcription	NHDF-Ad	bronchial
33	chr1:61598600-61605200	Weak transcription	Right Ventricle	heart
34	chr1:61598800-61599200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:61598800-61599400	Enhancers	Brain Anterior Caudate	brain
36	chr1:61598800-61599400	Enhancers	HUVEC	blood vessel
37	chr1:61598800-61599600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr1:61598800-61600000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:61598800-61600200	Enhancers	Brain Hippocampus Middle	brain
40	chr1:61598800-61601400	Weak transcription	K562	blood
41	chr1:61598800-61604800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:61598800-61604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:61598800-61605000	Weak transcription	Right Atrium	heart
44	chr1:61598800-61605200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:61598800-61605600	Weak transcription	Fetal Intestine Small	intestine
46	chr1:61599000-61599200	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr1:61599000-61599200	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr1:61599000-61599400	Weak transcription	Fetal Brain Male	brain
49	chr1:61599000-61599400	Enhancers	Stomach Smooth Muscle	stomach
50	chr1:61599000-61601600	Weak transcription	Fetal Heart	heart

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