Variant report

Variant	rs4915729
Chromosome Location	chr1:61602963-61602964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61599982..61604281-chr1:61617367..61621050,4	K562	blood:
2	chr1:61601892..61604405-chr1:61604981..61606872,2	K562	blood:
3	chr1:61602650..61606392-chr1:61608664..61611544,4	MCF-7	breast:
4	chr1:61599402..61604405-chr1:61604981..61606872,4	K562	blood:
5	chr1:61520693..61524394-chr1:61599232..61603090,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10789092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889207	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207692	0.87[CHD][hapmap];0.82[TSI][hapmap]
rs11207694	0.81[EUR][1000 genomes]
rs11207695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207702	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs12021605	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12033718	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12126498	1.00[CEU][hapmap]
rs12126737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12130085	0.87[CHD][hapmap];0.82[TSI][hapmap]
rs12142294	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12403502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12409737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1412712	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17121702	0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs17121705	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1832184	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1930314	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4620575	1.00[TSI][hapmap]
rs4915730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915731	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs964091	1.00[TSI][hapmap]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61581400-61604600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61582400-61604800	Weak transcription	Hela-S3	cervix
3	chr1:61587000-61606800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:61591800-61604600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:61594200-61603800	Weak transcription	Left Ventricle	heart
6	chr1:61598000-61604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:61598200-61604000	Weak transcription	NHEK	skin
8	chr1:61598200-61604800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:61598400-61604600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:61598400-61604800	Weak transcription	Adipose Nuclei	Adipose
11	chr1:61598600-61604800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:61598600-61604800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:61598600-61604800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:61598600-61605000	Weak transcription	Brain Angular Gyrus	brain
15	chr1:61598600-61605000	Weak transcription	NHDF-Ad	bronchial
16	chr1:61598600-61605200	Weak transcription	Right Ventricle	heart
17	chr1:61598800-61604800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:61598800-61604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:61598800-61605000	Weak transcription	Right Atrium	heart
20	chr1:61598800-61605200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:61598800-61605600	Weak transcription	Fetal Intestine Small	intestine
22	chr1:61599000-61604600	Weak transcription	Liver	Liver
23	chr1:61599000-61605000	Weak transcription	Brain Germinal Matrix	brain
24	chr1:61599000-61606200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:61599400-61603800	Weak transcription	Aorta	Aorta
26	chr1:61599400-61604800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:61599400-61604800	Weak transcription	HUVEC	blood vessel
28	chr1:61599400-61605000	Weak transcription	Fetal Lung	lung
29	chr1:61599400-61605000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:61599400-61605800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:61599600-61603800	Weak transcription	Fetal Stomach	stomach
32	chr1:61599600-61604600	Weak transcription	Brain Substantia Nigra	brain
33	chr1:61599600-61604800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:61599600-61604800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr1:61599600-61605800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:61600000-61604800	Weak transcription	HepG2	liver
37	chr1:61600000-61617200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:61600200-61604800	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:61600200-61605000	Weak transcription	Small Intestine	intestine
40	chr1:61601600-61603000	Weak transcription	Psoas Muscle	Psoas
41	chr1:61602000-61603400	Weak transcription	Brain Anterior Caudate	brain
42	chr1:61602000-61603800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr1:61602000-61604400	Weak transcription	Brain Hippocampus Middle	brain
44	chr1:61602000-61604800	Weak transcription	Fetal Brain Male	brain
45	chr1:61602000-61605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:61602200-61604800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:61602200-61604800	Weak transcription	Fetal Heart	heart
48	chr1:61602200-61604800	Weak transcription	A549	lung
49	chr1:61602200-61604800	Weak transcription	K562	blood
50	chr1:61602200-61605000	Weak transcription	Fetal Brain Female	brain

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