Variant report

Variant	rs11207696
Chromosome Location	chr1:61555994-61555995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61514738..61525752-chr1:61554119..61562013,14	K562	blood:
2	chr1:61536281..61537893-chr1:61555336..61557070,2	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10789092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889207	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207694	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11207695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207702	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12021605	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12033718	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12126498	1.00[CEU][hapmap]
rs12126737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12409737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412712	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17121702	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17121705	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1832184	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1930314	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620575	0.83[EUR][1000 genomes]
rs4915729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4915730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4915731	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs964091	0.83[EUR][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61549400-61558400	Weak transcription	Spleen	Spleen
2	chr1:61549800-61556000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:61549800-61556200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:61549800-61559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:61550200-61556600	Weak transcription	Placenta	Placenta
6	chr1:61550200-61558000	Weak transcription	Stomach Mucosa	stomach
7	chr1:61550200-61559400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:61550400-61558000	Weak transcription	Small Intestine	intestine
9	chr1:61550400-61560000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:61550600-61561000	Weak transcription	Colonic Mucosa	Colon
11	chr1:61550800-61557800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:61550800-61559600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:61552000-61556200	Weak transcription	NHEK	skin
14	chr1:61552200-61558000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:61553600-61556200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:61553800-61556400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:61553800-61556800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:61554000-61556400	Genic enhancers	Fetal Lung	lung
19	chr1:61554000-61556400	Strong transcription	HUVEC	blood vessel
20	chr1:61554000-61556600	Strong transcription	Fetal Muscle Trunk	muscle
21	chr1:61554000-61557400	Strong transcription	K562	blood
22	chr1:61554400-61556400	Transcr. at gene 5' and 3'	Fetal Brain Male	brain
23	chr1:61554400-61559400	Weak transcription	Osteobl	bone
24	chr1:61554600-61556000	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr1:61554600-61556200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:61554600-61556200	Weak transcription	Fetal Stomach	stomach
27	chr1:61554600-61556200	Weak transcription	HSMMtube	muscle
28	chr1:61554600-61556400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:61554600-61556800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr1:61554600-61556800	Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr1:61554600-61558000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:61554600-61558000	Weak transcription	Right Ventricle	heart
33	chr1:61554600-61558400	Active TSS	Aorta	Aorta
34	chr1:61554600-61558400	Weak transcription	Lung	lung
35	chr1:61554600-61558800	Enhancers	Fetal Heart	heart
36	chr1:61554600-61559400	Weak transcription	Left Ventricle	heart
37	chr1:61554600-61559400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr1:61554600-61559400	Weak transcription	HMEC	breast
39	chr1:61554600-61560200	Weak transcription	Ovary	ovary
40	chr1:61554600-61561800	Weak transcription	Pancreas	Pancrea
41	chr1:61554600-61563000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr1:61554600-61565800	Weak transcription	Gastric	stomach
43	chr1:61554600-61567000	Weak transcription	NHLF	lung
44	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
45	chr1:61554800-61556000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr1:61554800-61557400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr1:61554800-61557400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:61554800-61558000	Weak transcription	Fetal Intestine Small	intestine
49	chr1:61554800-61558400	Weak transcription	Fetal Intestine Large	intestine
50	chr1:61554800-61559200	Weak transcription	Rectal Mucosa Donor 29	rectum

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